diff report_clonality/circos/etc_colors.conf @ 54:81b3eb11ed2c draft

"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
author rhpvorderman
date Tue, 16 Nov 2021 15:42:32 +0000
parents 124b7fd92a3e
children
line wrap: on
line diff
--- a/report_clonality/circos/etc_colors.conf	Thu Feb 25 13:39:50 2021 +0000
+++ b/report_clonality/circos/etc_colors.conf	Tue Nov 16 15:42:32 2021 +0000
@@ -1,142 +1,142 @@
-# RGB color definition. Colors are refered to within configuration files
-# by their name. In order to use a color, you must define it here. 
-# 
-# e.g. if you really must use 'bisque', then add
-#
-# bisque = 255,228,196
-#
-# Many useful colors are already defined. In general, given a HUE, these
-# colors are defined
-#
-# vlHUE (very light HUE, e.g. vlred)
-# lHUE  (light HUE, e.g. red)
-# HUE   (e.g. red)
-# dHUE  (dark HUE, e.g. dred)
-#
-# In addition to hues, two other color groups are defined. 
-#
-# - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which
-#   correspond to colors on ideogram bands
-# - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA)
-
-optblue   = 55,133,221
-optgreen  = 55,221,125
-optyellow = 221,215,55
-optorange = 221,164,55
-optred    = 221,55,55
-optviolet = 145,55,221
-optpurple = 219,55,221
-
-white     = 255,255,255
-vvvvlgrey = 250,250,250
-vvvlgrey  = 240,240,240
-vvlgrey   = 230,230,230
-vlgrey    = 220,220,220
-lgrey     = 210,210,210
-grey      = 200,200,200
-dgrey     = 170,170,170
-vdgrey    = 140,140,140
-vvdgrey   = 100,100,100
-vvvdgrey  = 70,70,70
-vvvvdgrey = 40,40,40
-black     = 0,0,0
-
-vlred   = 255,193,200
-lred    = 255,122,137
-red     = 247,42,66
-dred    = 205,51,69
-
-vlgreen = 204,255,218
-lgreen  = 128,255,164
-green   = 51,204,94
-dgreen  = 38,153,71
-
-vlblue  = 128,176,255
-lblue   = 64,137,255
-blue    = 54,116,217
-dblue   = 38,82,153
-
-vlpurple= 242,128,255
-lpurple = 236,64,255
-purple  = 189,51,204
-dpurple = 118,32,128
-
-vlyellow = 255,253,202
-lyellow  = 255,252,150
-yellow   = 255,255,0
-dyellow  = 191,186,48
-
-lime     = 186,255,0
-
-vlorange = 255,228,193
-lorange  = 255,187,110
-orange   = 255,136,0
-dorange  = 221,143,55
-
-# karyotype colors
-
-gpos100 = 0,0,0
-gpos    = 0,0,0
-gpos75  = 130,130,130
-gpos66  = 160,160,160
-gpos50  = 200,200,200
-gpos33  = 210,210,210
-gpos25  = 200,200,200
-gvar    = 220,220,220
-gneg    = 255,255,255
-acen    = 217,47,39
-stalk   = 100,127,164
-
-# others
-
-select = 135,177,255
-
-# new york times cmyk-safe
-
-# roygbiv - normal
-nyt_blue   = 104,152,178
-nyt_green  = 137,129,96
-nyt_yellow = 241,221,117
-nyt_orange = 230,146,57
-nyt_red    = 217,47,39
-
-# chromosome color map (UCSC) 
-
-chr1 = 153,102,0
-chr2 = 102,102,0
-chr3 = 153,153,30
-chr4 = 204,0,0
-chr5 = 255,0,0
-chr6 = 255,0,204
-chr7 = 255,204,204
-chr8 = 255,153,0
-chr9 = 255,204,0
-chr10 = 255,255,0
-chr11 = 204,255,0
-chr12 = 0,255,0
-chr13 = 53,128,0
-chr14 = 0,0,204
-chr15 = 102,153,255
-chr16 = 153,204,255
-chr17 = 0,255,255
-chr18 = 204,255,255
-chr19 = 153,0,204
-chr20 = 204,51,255
-chr21 = 204,153,255
-chr22 = 102,102,102
-chr23 = 153,153,153
-chrX  = 153,153,153
-chr24 = 204,204,204
-chrY = 204,204,204
-chrM = 204,204,153
-chr0 = 204,204,153
-chrUn = 121,204,61
-chrNA = 255,255,255
-
-
-
-
-
-
-
-
+# RGB color definition. Colors are refered to within configuration files
+# by their name. In order to use a color, you must define it here. 
+# 
+# e.g. if you really must use 'bisque', then add
+#
+# bisque = 255,228,196
+#
+# Many useful colors are already defined. In general, given a HUE, these
+# colors are defined
+#
+# vlHUE (very light HUE, e.g. vlred)
+# lHUE  (light HUE, e.g. red)
+# HUE   (e.g. red)
+# dHUE  (dark HUE, e.g. dred)
+#
+# In addition to hues, two other color groups are defined. 
+#
+# - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which
+#   correspond to colors on ideogram bands
+# - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA)
+
+optblue   = 55,133,221
+optgreen  = 55,221,125
+optyellow = 221,215,55
+optorange = 221,164,55
+optred    = 221,55,55
+optviolet = 145,55,221
+optpurple = 219,55,221
+
+white     = 255,255,255
+vvvvlgrey = 250,250,250
+vvvlgrey  = 240,240,240
+vvlgrey   = 230,230,230
+vlgrey    = 220,220,220
+lgrey     = 210,210,210
+grey      = 200,200,200
+dgrey     = 170,170,170
+vdgrey    = 140,140,140
+vvdgrey   = 100,100,100
+vvvdgrey  = 70,70,70
+vvvvdgrey = 40,40,40
+black     = 0,0,0
+
+vlred   = 255,193,200
+lred    = 255,122,137
+red     = 247,42,66
+dred    = 205,51,69
+
+vlgreen = 204,255,218
+lgreen  = 128,255,164
+green   = 51,204,94
+dgreen  = 38,153,71
+
+vlblue  = 128,176,255
+lblue   = 64,137,255
+blue    = 54,116,217
+dblue   = 38,82,153
+
+vlpurple= 242,128,255
+lpurple = 236,64,255
+purple  = 189,51,204
+dpurple = 118,32,128
+
+vlyellow = 255,253,202
+lyellow  = 255,252,150
+yellow   = 255,255,0
+dyellow  = 191,186,48
+
+lime     = 186,255,0
+
+vlorange = 255,228,193
+lorange  = 255,187,110
+orange   = 255,136,0
+dorange  = 221,143,55
+
+# karyotype colors
+
+gpos100 = 0,0,0
+gpos    = 0,0,0
+gpos75  = 130,130,130
+gpos66  = 160,160,160
+gpos50  = 200,200,200
+gpos33  = 210,210,210
+gpos25  = 200,200,200
+gvar    = 220,220,220
+gneg    = 255,255,255
+acen    = 217,47,39
+stalk   = 100,127,164
+
+# others
+
+select = 135,177,255
+
+# new york times cmyk-safe
+
+# roygbiv - normal
+nyt_blue   = 104,152,178
+nyt_green  = 137,129,96
+nyt_yellow = 241,221,117
+nyt_orange = 230,146,57
+nyt_red    = 217,47,39
+
+# chromosome color map (UCSC) 
+
+chr1 = 153,102,0
+chr2 = 102,102,0
+chr3 = 153,153,30
+chr4 = 204,0,0
+chr5 = 255,0,0
+chr6 = 255,0,204
+chr7 = 255,204,204
+chr8 = 255,153,0
+chr9 = 255,204,0
+chr10 = 255,255,0
+chr11 = 204,255,0
+chr12 = 0,255,0
+chr13 = 53,128,0
+chr14 = 0,0,204
+chr15 = 102,153,255
+chr16 = 153,204,255
+chr17 = 0,255,255
+chr18 = 204,255,255
+chr19 = 153,0,204
+chr20 = 204,51,255
+chr21 = 204,153,255
+chr22 = 102,102,102
+chr23 = 153,153,153
+chrX  = 153,153,153
+chr24 = 204,204,204
+chrY = 204,204,204
+chrM = 204,204,153
+chr0 = 204,204,153
+chrUn = 121,204,61
+chrNA = 255,255,255
+
+
+
+
+
+
+
+