Mercurial > repos > davidvanzessen > argalaxy_tools
diff report_clonality/circos/etc_colors.conf @ 54:81b3eb11ed2c draft
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
author | rhpvorderman |
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date | Tue, 16 Nov 2021 15:42:32 +0000 |
parents | 124b7fd92a3e |
children |
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--- a/report_clonality/circos/etc_colors.conf Thu Feb 25 13:39:50 2021 +0000 +++ b/report_clonality/circos/etc_colors.conf Tue Nov 16 15:42:32 2021 +0000 @@ -1,142 +1,142 @@ -# RGB color definition. Colors are refered to within configuration files -# by their name. In order to use a color, you must define it here. -# -# e.g. if you really must use 'bisque', then add -# -# bisque = 255,228,196 -# -# Many useful colors are already defined. In general, given a HUE, these -# colors are defined -# -# vlHUE (very light HUE, e.g. vlred) -# lHUE (light HUE, e.g. red) -# HUE (e.g. red) -# dHUE (dark HUE, e.g. dred) -# -# In addition to hues, two other color groups are defined. -# -# - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which -# correspond to colors on ideogram bands -# - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA) - -optblue = 55,133,221 -optgreen = 55,221,125 -optyellow = 221,215,55 -optorange = 221,164,55 -optred = 221,55,55 -optviolet = 145,55,221 -optpurple = 219,55,221 - -white = 255,255,255 -vvvvlgrey = 250,250,250 -vvvlgrey = 240,240,240 -vvlgrey = 230,230,230 -vlgrey = 220,220,220 -lgrey = 210,210,210 -grey = 200,200,200 -dgrey = 170,170,170 -vdgrey = 140,140,140 -vvdgrey = 100,100,100 -vvvdgrey = 70,70,70 -vvvvdgrey = 40,40,40 -black = 0,0,0 - -vlred = 255,193,200 -lred = 255,122,137 -red = 247,42,66 -dred = 205,51,69 - -vlgreen = 204,255,218 -lgreen = 128,255,164 -green = 51,204,94 -dgreen = 38,153,71 - -vlblue = 128,176,255 -lblue = 64,137,255 -blue = 54,116,217 -dblue = 38,82,153 - -vlpurple= 242,128,255 -lpurple = 236,64,255 -purple = 189,51,204 -dpurple = 118,32,128 - -vlyellow = 255,253,202 -lyellow = 255,252,150 -yellow = 255,255,0 -dyellow = 191,186,48 - -lime = 186,255,0 - -vlorange = 255,228,193 -lorange = 255,187,110 -orange = 255,136,0 -dorange = 221,143,55 - -# karyotype colors - -gpos100 = 0,0,0 -gpos = 0,0,0 -gpos75 = 130,130,130 -gpos66 = 160,160,160 -gpos50 = 200,200,200 -gpos33 = 210,210,210 -gpos25 = 200,200,200 -gvar = 220,220,220 -gneg = 255,255,255 -acen = 217,47,39 -stalk = 100,127,164 - -# others - -select = 135,177,255 - -# new york times cmyk-safe - -# roygbiv - normal -nyt_blue = 104,152,178 -nyt_green = 137,129,96 -nyt_yellow = 241,221,117 -nyt_orange = 230,146,57 -nyt_red = 217,47,39 - -# chromosome color map (UCSC) - -chr1 = 153,102,0 -chr2 = 102,102,0 -chr3 = 153,153,30 -chr4 = 204,0,0 -chr5 = 255,0,0 -chr6 = 255,0,204 -chr7 = 255,204,204 -chr8 = 255,153,0 -chr9 = 255,204,0 -chr10 = 255,255,0 -chr11 = 204,255,0 -chr12 = 0,255,0 -chr13 = 53,128,0 -chr14 = 0,0,204 -chr15 = 102,153,255 -chr16 = 153,204,255 -chr17 = 0,255,255 -chr18 = 204,255,255 -chr19 = 153,0,204 -chr20 = 204,51,255 -chr21 = 204,153,255 -chr22 = 102,102,102 -chr23 = 153,153,153 -chrX = 153,153,153 -chr24 = 204,204,204 -chrY = 204,204,204 -chrM = 204,204,153 -chr0 = 204,204,153 -chrUn = 121,204,61 -chrNA = 255,255,255 - - - - - - - - +# RGB color definition. Colors are refered to within configuration files +# by their name. In order to use a color, you must define it here. +# +# e.g. if you really must use 'bisque', then add +# +# bisque = 255,228,196 +# +# Many useful colors are already defined. In general, given a HUE, these +# colors are defined +# +# vlHUE (very light HUE, e.g. vlred) +# lHUE (light HUE, e.g. red) +# HUE (e.g. red) +# dHUE (dark HUE, e.g. dred) +# +# In addition to hues, two other color groups are defined. +# +# - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which +# correspond to colors on ideogram bands +# - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA) + +optblue = 55,133,221 +optgreen = 55,221,125 +optyellow = 221,215,55 +optorange = 221,164,55 +optred = 221,55,55 +optviolet = 145,55,221 +optpurple = 219,55,221 + +white = 255,255,255 +vvvvlgrey = 250,250,250 +vvvlgrey = 240,240,240 +vvlgrey = 230,230,230 +vlgrey = 220,220,220 +lgrey = 210,210,210 +grey = 200,200,200 +dgrey = 170,170,170 +vdgrey = 140,140,140 +vvdgrey = 100,100,100 +vvvdgrey = 70,70,70 +vvvvdgrey = 40,40,40 +black = 0,0,0 + +vlred = 255,193,200 +lred = 255,122,137 +red = 247,42,66 +dred = 205,51,69 + +vlgreen = 204,255,218 +lgreen = 128,255,164 +green = 51,204,94 +dgreen = 38,153,71 + +vlblue = 128,176,255 +lblue = 64,137,255 +blue = 54,116,217 +dblue = 38,82,153 + +vlpurple= 242,128,255 +lpurple = 236,64,255 +purple = 189,51,204 +dpurple = 118,32,128 + +vlyellow = 255,253,202 +lyellow = 255,252,150 +yellow = 255,255,0 +dyellow = 191,186,48 + +lime = 186,255,0 + +vlorange = 255,228,193 +lorange = 255,187,110 +orange = 255,136,0 +dorange = 221,143,55 + +# karyotype colors + +gpos100 = 0,0,0 +gpos = 0,0,0 +gpos75 = 130,130,130 +gpos66 = 160,160,160 +gpos50 = 200,200,200 +gpos33 = 210,210,210 +gpos25 = 200,200,200 +gvar = 220,220,220 +gneg = 255,255,255 +acen = 217,47,39 +stalk = 100,127,164 + +# others + +select = 135,177,255 + +# new york times cmyk-safe + +# roygbiv - normal +nyt_blue = 104,152,178 +nyt_green = 137,129,96 +nyt_yellow = 241,221,117 +nyt_orange = 230,146,57 +nyt_red = 217,47,39 + +# chromosome color map (UCSC) + +chr1 = 153,102,0 +chr2 = 102,102,0 +chr3 = 153,153,30 +chr4 = 204,0,0 +chr5 = 255,0,0 +chr6 = 255,0,204 +chr7 = 255,204,204 +chr8 = 255,153,0 +chr9 = 255,204,0 +chr10 = 255,255,0 +chr11 = 204,255,0 +chr12 = 0,255,0 +chr13 = 53,128,0 +chr14 = 0,0,204 +chr15 = 102,153,255 +chr16 = 153,204,255 +chr17 = 0,255,255 +chr18 = 204,255,255 +chr19 = 153,0,204 +chr20 = 204,51,255 +chr21 = 204,153,255 +chr22 = 102,102,102 +chr23 = 153,153,153 +chrX = 153,153,153 +chr24 = 204,204,204 +chrY = 204,204,204 +chrM = 204,204,153 +chr0 = 204,204,153 +chrUn = 121,204,61 +chrNA = 255,255,255 + + + + + + + +