Mercurial > repos > davidvanzessen > argalaxy_tools

diff report_clonality/naive_cdr3_char.htm @ 54:81b3eb11ed2c draft

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"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
author rhpvorderman
date Tue, 16 Nov 2021 15:42:32 +0000
parents 124b7fd92a3e
children 4c6df851e262
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--- a/report_clonality/naive_cdr3_char.htm	Thu Feb 25 13:39:50 2021 +0000
+++ b/report_clonality/naive_cdr3_char.htm	Tue Nov 16 15:42:32 2021 +0000
@@ -1,101 +1,101 @@
-<html>
-
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
-<meta name=Generator content="Microsoft Word 14 (filtered)">
-<style>
-<!--
- /* Font Definitions */
- @font-face
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-.MsoChpDefault
-	{font-family:"Calibri","sans-serif";}
-.MsoPapDefault
-	{margin-bottom:10.0pt;
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-@page WordSection1
-	{size:8.5in 11.0in;
-	margin:1.0in 1.0in 1.0in 1.0in;}
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-	{page:WordSection1;}
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-	{mso-style-priority:1;
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--->
-</style>
-
-</head>
-
-<body lang=EN-US>
-
-<div class=WordSection1>
-
-<p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p>
-
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>This tab gives information on the
-different characteristics of the CDR3.</span></p>
-
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
-12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
-
-<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p>
-
-<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><span style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>Graph visualizing for each donor the
-distribution of the CDR3 length in amino acids between all sequences.</span></p>
-
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p>
-
-<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how
-frequent each amino acid is used in the CDR3 of all sequences. The red colour
-in the background indicate positively charged amino acids, and the blue colour
-in the background indicate negatively charged amino acids. The amino acids are
-ordered from hydrophilic (left) to hydrophobic (right). </span></p>
-
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
-12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p>
-
-<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>Table showing for each donor the median
-CDR3 length.</span></p>
-
-<p class=MsoNormal><span lang=EN-GB>&nbsp;</span></p>
-
-</div>
-
-</body>
-
-</html>
+<html>
+
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
+<meta name=Generator content="Microsoft Word 14 (filtered)">
+<style>
+<!--
+ /* Font Definitions */
+ @font-face
+	{font-family:Calibri;
+	panose-1:2 15 5 2 2 2 4 3 2 4;}
+ /* Style Definitions */
+ p.MsoNormal, li.MsoNormal, div.MsoNormal
+	{margin-top:0in;
+	margin-right:0in;
+	margin-bottom:10.0pt;
+	margin-left:0in;
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+	font-size:11.0pt;
+	font-family:"Calibri","sans-serif";}
+.MsoChpDefault
+	{font-family:"Calibri","sans-serif";}
+.MsoPapDefault
+	{margin-bottom:10.0pt;
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+	margin:1.0in 1.0in 1.0in 1.0in;}
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+	{page:WordSection1;}
+p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
+	{mso-style-priority:1;
+	mso-style-unhide:no;
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+	margin:0in;
+	margin-bottom:.0001pt;
+	mso-pagination:widow-orphan;
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+	font-family:"Calibri","sans-serif";
+	mso-fareast-font-family:"Times New Roman";
+	mso-fareast-theme-font:minor-fareast;
+	mso-bidi-font-family:"Times New Roman";}
+-->
+</style>
+
+</head>
+
+<body lang=EN-US>
+
+<div class=WordSection1>
+
+<p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt;
+font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p>
+
+<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif"'>This tab gives information on the
+different characteristics of the CDR3.</span></p>
+
+<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
+12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
+
+<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
+font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p>
+
+<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><span style='font-size:12.0pt;
+font-family:"Times New Roman","serif"'>Graph visualizing for each donor the
+distribution of the CDR3 length in amino acids between all sequences.</span></p>
+
+<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
+font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p>
+
+<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how
+frequent each amino acid is used in the CDR3 of all sequences. The red colour
+in the background indicate positively charged amino acids, and the blue colour
+in the background indicate negatively charged amino acids. The amino acids are
+ordered from hydrophilic (left) to hydrophobic (right). </span></p>
+
+<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
+12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p>
+
+<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif"'>Table showing for each donor the median
+CDR3 length.</span></p>
+
+<p class=MsoNormal><span lang=EN-GB>&nbsp;</span></p>
+
+</div>
+
+</body>
+
+</html>