Mercurial > repos > davidvanzessen > argalaxy_tools
diff report_clonality/naive_clonality.htm @ 54:81b3eb11ed2c draft
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
| author | rhpvorderman |
|---|---|
| date | Tue, 16 Nov 2021 15:42:32 +0000 |
| parents | 124b7fd92a3e |
| children | 4c6df851e262 |
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--- a/report_clonality/naive_clonality.htm Thu Feb 25 13:39:50 2021 +0000 +++ b/report_clonality/naive_clonality.htm Tue Nov 16 15:42:32 2021 +0000 @@ -1,67 +1,67 @@ -<html> - -<head> -<meta http-equiv=Content-Type content="text/html; charset=windows-1252"> -<meta name=Generator content="Microsoft Word 14 (filtered)"> -<style> -<!-- - /* Font Definitions */ - @font-face - {font-family:Calibri; - panose-1:2 15 5 2 2 2 4 3 2 4;} - /* Style Definitions */ - p.MsoNormal, li.MsoNormal, div.MsoNormal - {margin-top:0in; - margin-right:0in; - margin-bottom:10.0pt; - margin-left:0in; - line-height:115%; - font-size:11.0pt; - font-family:"Calibri","sans-serif";} -p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing - {margin:0in; - margin-bottom:.0001pt; - font-size:11.0pt; - font-family:"Calibri","sans-serif";} -.MsoChpDefault - {font-family:"Calibri","sans-serif";} -.MsoPapDefault - {margin-bottom:10.0pt; - line-height:115%;} -@page WordSection1 - {size:8.5in 11.0in; - margin:1.0in 1.0in 1.0in 1.0in;} -div.WordSection1 - {page:WordSection1;} ---> -</style> - -</head> - -<body lang=EN-US> - -<div class=WordSection1> - -<p class=MsoNoSpacingCxSpFirst style='text-align:justify'><span -style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each donor a -subtab is provided containing information on the sequence overlap between -replicates of the different replicates of one donor. Dependent on the settings -of the Shared clonal types / clonality filter a clonality score is given. The clonality -score is calculated according to the formula described by </span><a -name="OLE_LINK13"></a><a name="OLE_LINK12"></a><a name="OLE_LINK11"><span -lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Boyd -et al, PMID: 20161664. </span></a></p> - -<p class=MsoNoSpacingCxSpLast style='text-align:justify'><span lang=EN-GB -style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each -individual replicate the number of reads is reported. In addition, the number -of coincidences between the different replicates of the same donor are reported. -</span></p> - -<p class=MsoNormal> </p> - -</div> - -</body> - -</html> +<html> + +<head> +<meta http-equiv=Content-Type content="text/html; charset=windows-1252"> +<meta name=Generator content="Microsoft Word 14 (filtered)"> +<style> +<!-- + /* Font Definitions */ + @font-face + {font-family:Calibri; + panose-1:2 15 5 2 2 2 4 3 2 4;} + /* Style Definitions */ + p.MsoNormal, li.MsoNormal, div.MsoNormal + {margin-top:0in; + margin-right:0in; + margin-bottom:10.0pt; + margin-left:0in; + line-height:115%; + font-size:11.0pt; + font-family:"Calibri","sans-serif";} +p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing + {margin:0in; + margin-bottom:.0001pt; + font-size:11.0pt; + font-family:"Calibri","sans-serif";} +.MsoChpDefault + {font-family:"Calibri","sans-serif";} +.MsoPapDefault + {margin-bottom:10.0pt; + line-height:115%;} +@page WordSection1 + {size:8.5in 11.0in; + margin:1.0in 1.0in 1.0in 1.0in;} +div.WordSection1 + {page:WordSection1;} +--> +</style> + +</head> + +<body lang=EN-US> + +<div class=WordSection1> + +<p class=MsoNoSpacingCxSpFirst style='text-align:justify'><span +style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each donor a +subtab is provided containing information on the sequence overlap between +replicates of the different replicates of one donor. Dependent on the settings +of the Shared clonal types / clonality filter a clonality score is given. The clonality +score is calculated according to the formula described by </span><a +name="OLE_LINK13"></a><a name="OLE_LINK12"></a><a name="OLE_LINK11"><span +lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Boyd +et al, PMID: 20161664. </span></a></p> + +<p class=MsoNoSpacingCxSpLast style='text-align:justify'><span lang=EN-GB +style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each +individual replicate the number of reads is reported. In addition, the number +of coincidences between the different replicates of the same donor are reported. +</span></p> + +<p class=MsoNormal> </p> + +</div> + +</body> + +</html>