Mercurial > repos > davidvanzessen > argalaxy_tools

diff report_clonality/naive_cdr3_char.htm @ 27:b539aeb75980 draft

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author davidvanzessen
date Tue, 28 Feb 2017 08:10:34 -0500
parents 5d11c9139a55
children 4d2a8f98a502
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--- a/report_clonality/naive_cdr3_char.htm	Mon Feb 13 09:08:46 2017 -0500
+++ b/report_clonality/naive_cdr3_char.htm	Tue Feb 28 08:10:34 2017 -0500
@@ -18,11 +18,6 @@
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 .MsoChpDefault
 	{font-family:"Calibri","sans-serif";}
 .MsoPapDefault
@@ -33,6 +28,18 @@
 	margin:1.0in 1.0in 1.0in 1.0in;}
 div.WordSection1
 	{page:WordSection1;}
+p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
+	{mso-style-priority:1;
+	mso-style-unhide:no;
+	mso-style-qformat:yes;
+	margin:0in;
+	margin-bottom:.0001pt;
+	mso-pagination:widow-orphan;
+	font-size:11.0pt;
+	font-family:"Calibri","sans-serif";
+	mso-fareast-font-family:"Times New Roman";
+	mso-fareast-theme-font:minor-fareast;
+	mso-bidi-font-family:"Times New Roman";}
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 </style>
 
@@ -43,6 +50,10 @@
 <div class=WordSection1>
 
 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
+text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt;
+font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p>
+
+<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'>This tab gives information on the
 different characteristics of the CDR3.</span></p>
@@ -51,21 +62,20 @@
 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
 12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
 
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
+<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p>
 
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
+<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
 text-align:justify;line-height:normal'><span style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'>Graph visualizing for each donor the
 distribution of the CDR3 length in amino acids between all sequences.</span></p>
 
-
 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p>
 
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
+<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how
 frequent each amino acid is used in the CDR3 of all sequences. The red colour
@@ -74,19 +84,10 @@
 ordered from hydrophilic (left) to hydrophobic (right). </span></p>
 
 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>D reading frame</span></u></p>
-
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>Bar graph visualizing the frequency by
-which each D reading frame is used in each donor.</span></p>
-
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
 12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p>
 
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
+<p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'>Table showing for each donor the median
 CDR3 length.</span></p>