diff report_clonality/naive_gene_freq.htm @ 27:b539aeb75980 draft

Uploaded
author davidvanzessen
date Tue, 28 Feb 2017 08:10:34 -0500
parents 5d11c9139a55
children 4d2a8f98a502
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--- a/report_clonality/naive_gene_freq.htm	Mon Feb 13 09:08:46 2017 -0500
+++ b/report_clonality/naive_gene_freq.htm	Tue Feb 28 08:10:34 2017 -0500
@@ -1,103 +1,217 @@
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-<body lang=EN-US>
+<body lang=EN-US style='tab-interval:.5in'>
 
 <div class=WordSection1>
 
+<p class=MsoNoSpacing style='text-align:justify'><b><u><span lang=EN-GB
+style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
+EN-GB'>Gene frequencies tab</span></u></b></p>
+
 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
 justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>This tab gives information on the
-frequency of V, D and J gene usage. </span></p>
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>This tab gives
+information on the frequency of V, D and J gene usage. <o:p></o:p></span></p>
+
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><o:p>&nbsp;</o:p></p>
 
-<p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><b><span lang=EN-GB
-style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
+<p class=MsoNoSpacing style='text-align:justify'><b><span lang=EN-GB
+style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
+EN-GB'>Graphs</span></b></p>
 
-<p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><u><span lang=EN-GB style='font-size:
-12.0pt;font-family:"Times New Roman","serif"'>Distribution of V gene families</span></u></p>
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Distribution of
+V gene families<o:p></o:p></span></u></p>
 
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><a name="OLE_LINK123"></a><a
-name="OLE_LINK122"></a><a name="OLE_LINK121"><span lang=EN-GB style='font-size:
-12.0pt;font-family:"Times New Roman","serif"'>Bar graph showing the frequency
-of V gene family usage in all uploaded donors. </span></a></p>
+<p class=MsoNoSpacing style='text-align:justify'><a name="OLE_LINK121"></a><a
+name="OLE_LINK123"></a><a name="OLE_LINK122"></a><span style='mso-bookmark:
+OLE_LINK121'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
+mso-ansi-language:EN-GB'>Bar graph showing the frequency of V gene family usage
+in all uploaded donors. </span></span><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
+
+<p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
 
-<p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><u><span lang=EN-GB style='font-size:
-12.0pt;font-family:"Times New Roman","serif"'>Relative frequency of V gene
-usage</span></u></p>
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
+frequency of V gene usage<o:p></o:p></span></u></p>
+
+<p class=MsoNoSpacing style='text-align:justify'><a name="OLE_LINK124"></a><a
+name="OLE_LINK126"></a><a name="OLE_LINK125"></a><span style='mso-bookmark:
+OLE_LINK124'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
+mso-ansi-language:EN-GB'>Bar graph showing the frequency of V genes in all
+uploaded donors. The order of the V genes on the x-axis can be altered by
+altering the “<span style='color:black;background:white'>Order of V(D)J genes
+in graphs” filter on the main page of the Immune repertoire pipeline.</span></span></span><span
+lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
+color:black;background:white;mso-ansi-language:EN-GB'><o:p></o:p></span></p>
 
-<p class=MsoNormalCxSpLast style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><a name="OLE_LINK126"></a><a
-name="OLE_LINK125"></a><a name="OLE_LINK124"><span lang=EN-GB style='font-size:
-12.0pt;font-family:"Times New Roman","serif"'>Bar graph showing the frequency
-of V genes in all uploaded donors. The order of the V genes on the x-axis can
-be altered by altering the “<span style='color:black;background:white'>Order of
-V(D)J genes in graphs” filter on the main page of the Immune repertoire
-pipeline.</span></span></a></p>
+<p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
+
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
+frequency of D gene usage<o:p></o:p></span></u></p>
 
-<p class=MsoNoSpacingCxSpLast style='text-align:justify'><a name="OLE_LINK129"></a><a
-name="OLE_LINK128"></a><a name="OLE_LINK127"><u><span lang=EN-GB
-style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Relative
-frequency of D gene usage</span></u></a></p>
+<p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
+style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
+EN-GB'>Bar graph showing the frequency of D genes in all uploaded donors. The
+order of the D genes on the x-axis can be altered by altering the “<span
+style='color:black;background:white'>Order of V(D)J genes in graphs” filter on
+the main page of the Immune repertoire pipeline.<o:p></o:p></span></span></p>
+
+<p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
 
-<p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>Bar graph showing the frequency of D
-genes in all uploaded donors. The order of the D genes on the x-axis can be
-altered by altering the “<span style='color:black;background:white'>Order of
-V(D)J genes in graphs” filter on the main page of the Immune repertoire
-pipeline.</span></span></p>
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
+frequency of J gene usage<o:p></o:p></span></u></p>
 
-<p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
-style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Relative
-frequency of J gene usage</span></u></p>
+<p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
+style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
+EN-GB'>Bar graph showing the frequency of J genes in all uploaded donors. The
+order of the J genes on the x-axis can be altered by altering the “<span
+style='color:black;background:white'>Order of V(D)J genes in graphs” filter on
+the main page of the Immune repertoire pipeline.<o:p></o:p></span></span></p>
+
+<p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
 
-<p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
-text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
-font-family:"Times New Roman","serif"'>Bar graph showing the frequency of J
-genes in all uploaded donors. The order of the J genes on the x-axis can be
-altered by altering the “<span style='color:black;background:white'>Order of
-V(D)J genes in graphs” filter on the main page of the Immune repertoire
-pipeline.</span></span></p>
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'>D
+reading frame<o:p></o:p></span></u></p>
+
+<p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
+style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
+EN-GB'>Bar graph visualizing the frequency by which each D reading frame is
+used in each donor.</span></p>
 
 </div>