Mercurial > repos > davidvanzessen > argalaxy_tools
diff igparse.xml @ 6:d001d0c05dbe draft
Uploaded
author | davidvanzessen |
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date | Fri, 16 Dec 2016 07:30:32 -0500 |
parents | afe85eb6572e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/igparse.xml Fri Dec 16 07:30:32 2016 -0500 @@ -0,0 +1,15 @@ +<tool id="igblastparser_igg" name="igBLASTparser" version="0.2.0"> + <description> </description> + <command interpreter="perl"> + igblastparser/igparse.pl $input 0 2>/dev/null | grep -v "D:" | cut -f2- > $output + </command> + <inputs> + <param name="input" type="data" format="text" label="igBLASTn report"/> + </inputs> + <outputs> + <data name="output" format="tabular" label="${input.name}-parsed" /> + </outputs> + <help> + Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1) + </help> +</tool>