Mercurial > repos > davidvanzessen > argalaxy_tools
diff complete.sh @ 24:d5d203d38c8a draft
Uploaded
author | davidvanzessen |
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date | Wed, 01 Feb 2017 09:48:38 -0500 |
parents | 54f6756bacb1 |
children | 124b7fd92a3e |
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--- a/complete.sh Fri Jan 27 04:29:43 2017 -0500 +++ b/complete.sh Wed Feb 01 09:48:38 2017 -0500 @@ -19,6 +19,10 @@ #unzip $dir/database.zip -d $PWD/igblastdatabase/ #export IGDATA=$PWD/igblastdatabase/ +echo "python: `which python`" +echo "R: `which R`" +echo "Rscript: `which Rscript`" + id="" forwardSlash="/" mergerInput=() @@ -39,6 +43,7 @@ f=$(file $current) zipType="Zip archive" zxType="XZ compressed data" + echo "filetype of ${id}: $f" if [[ "$f" == *"$zipType"* ]] || [[ "$f" == *"$zxType"* ]] then echo "<tr><td>Sample $count of patient $id is an archive file, using IMGT Loader</td></tr>" >> $html