Mercurial > repos > davidvanzessen > argalaxy_tools
diff report_clonality/r_wrapper.sh @ 35:dc6c53a11d7d draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 28 Mar 2017 08:51:34 -0400 |
| parents | 6603110e5be3 |
| children | edf2d5882b77 |
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--- a/report_clonality/r_wrapper.sh Tue Mar 28 08:48:29 2017 -0400 +++ b/report_clonality/r_wrapper.sh Tue Mar 28 08:51:34 2017 -0400 @@ -196,11 +196,11 @@ for sample in $samples; do echo "<div class='tabbertab' title='$sample'><table border='1'><center>" >> $outputFile if [[ "$useD" == "true" ]] ; then - echo "<tr><td>V-D</td><td><a href='circosVD_${sample}.pdf'><img src='circosVD_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile + echo "<tr><td>V-D</td><td><a href='circosVD_${sample}.svg'><img src='circosVD_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile fi - echo "<tr><td>V-J</td><td><a href='circosVJ_${sample}.pdf'><img src='circosVJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile + echo "<tr><td>V-J</td><td><a href='circosVJ_${sample}.svg'><img src='circosVJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile if [[ "$useD" == "true" ]] ; then - echo "<tr><td>D-J</td><td><a href='circosDJ_${sample}.pdf'><img src='circosDJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile + echo "<tr><td>D-J</td><td><a href='circosDJ_${sample}.svg'><img src='circosDJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile fi echo "<center></table></div>" >> $outputFile count=$((count+1))