Mercurial > repos > davidvanzessen > argalaxy_tools

diff report_clonality/r_wrapper.sh @ 23:e2fbdfacec1d draft

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Uploaded
author davidvanzessen
date Fri, 27 Jan 2017 04:29:43 -0500
parents c28da767799f
children d5d203d38c8a
line wrap: on
line diff
--- a/report_clonality/r_wrapper.sh	Fri Jan 27 04:24:41 2017 -0500
+++ b/report_clonality/r_wrapper.sh	Fri Jan 27 04:29:43 2017 -0500
@@ -262,7 +262,7 @@
 			echo "<div class='tabbertab' title='$sample'>" >> $outputFile
 			echo "Lymphclon clonality score: <br />$clonalityScore<br /><br />" >> $outputFile
 			echo "<table border = 1>" >> $outputFile
-			while IFS=, read type count
+			while read type count
 			do
 				echo "<tr><td>$type</td><td>$count</td></tr>" >> $outputFile
 			done < $outputDir/lymphclon_coincidences_$sample.txt