Mercurial > repos > davidvanzessen > argalaxy_tools
diff igblast/igblast.sh @ 51:e35b82f31ec7 draft
Uploaded
author | davidvanzessen |
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date | Thu, 08 Aug 2019 07:40:36 -0400 |
parents | 4d2a8f98a502 |
children | 124b7fd92a3e |
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--- a/igblast/igblast.sh Wed Jul 10 03:38:24 2019 -0400 +++ b/igblast/igblast.sh Thu Aug 08 07:40:36 2019 -0400 @@ -23,6 +23,6 @@ echo "$input $species $locus $output" -java -Xmx16G -jar $IGBLASTWRP/igblastwrp.jar -p 4 -S $species -R $locus ${input} $PWD/blasted_output 2>&1 +java -Xmx16G -jar $dir/igblastwrp.jar -p 4 -S $species -R $locus ${input} $PWD/blasted_output 2>&1 Rscript --verbose $dir/igblast.r "$PWD/blasted_output.L2.txt" "$output" 2>&1