Mercurial > repos > davidvanzessen > argalaxy_tools
view report_clonality/naive_cdr3_char.htm @ 48:efe0a2b5d163 draft
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author | davidvanzessen |
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date | Tue, 18 Jun 2019 09:23:41 -0400 |
parents | 4d2a8f98a502 |
children | 124b7fd92a3e |
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<html> <head> <meta http-equiv=Content-Type content="text/html; charset=windows-1252"> <meta name=Generator content="Microsoft Word 14 (filtered)"> <style> <!-- /* Font Definitions */ @font-face {font-family:Calibri; panose-1:2 15 5 2 2 2 4 3 2 4;} /* Style Definitions */ p.MsoNormal, li.MsoNormal, div.MsoNormal {margin-top:0in; margin-right:0in; margin-bottom:10.0pt; margin-left:0in; line-height:115%; font-size:11.0pt; font-family:"Calibri","sans-serif";} .MsoChpDefault {font-family:"Calibri","sans-serif";} .MsoPapDefault {margin-bottom:10.0pt; line-height:115%;} @page WordSection1 {size:8.5in 11.0in; margin:1.0in 1.0in 1.0in 1.0in;} div.WordSection1 {page:WordSection1;} p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing {mso-style-priority:1; mso-style-unhide:no; mso-style-qformat:yes; margin:0in; margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-bidi-font-family:"Times New Roman";} --> </style> </head> <body lang=EN-US> <div class=WordSection1> <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt; font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p> <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; font-family:"Times New Roman","serif"'>This tab gives information on the different characteristics of the CDR3.</span></p> <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size: 12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p> <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><u><span style='font-size:12.0pt; font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p> <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><span style='font-size:12.0pt; font-family:"Times New Roman","serif"'>Graph visualizing for each donor the distribution of the CDR3 length in amino acids between all sequences.</span></p> <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><u><span style='font-size:12.0pt; font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p> <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how frequent each amino acid is used in the CDR3 of all sequences. The red colour in the background indicate positively charged amino acids, and the blue colour in the background indicate negatively charged amino acids. The amino acids are ordered from hydrophilic (left) to hydrophobic (right). </span></p> <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size: 12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p> <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt; text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; font-family:"Times New Roman","serif"'>Table showing for each donor the median CDR3 length.</span></p> <p class=MsoNormal><span lang=EN-GB> </span></p> </div> </body> </html>