Mercurial > repos > davidvanzessen > argalaxy_tools
view create_container_hash.py @ 61:f38a058e1a74 draft default tip
planemo upload commit 93519df849f317f4a8fc6167a48a4ee06e6aeff8
author | rhpvorderman |
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date | Wed, 30 Apr 2025 12:44:38 +0000 |
parents | 33412e85e669 |
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#!/usr/bin/env python3 import sys from xml.etree import ElementTree from xml.etree.ElementTree import Element DEFAULT_BASE_IMAGE = "bgruening/busybox-bash:latest" def main(): try: base_image = sys.argv[1] except IndexError: base_image = DEFAULT_BASE_IMAGE tool = ElementTree.parse("complete_immunerepertoire.xml").getroot() requirements: Element = tool.find("requirements") packages = [] for req in requirements.findall("requirement"): if req.get("type") == "package": name = req.text version = req.get("version") package_string = f"{name}={version}" packages.append(package_string) with open("container_hash.tsv", mode="wt") as container_hash_file: container_hash_file.write("#targets\tbase_image\timage_build\n") container_hash_file.write(",".join(packages) + f"\t{base_image}\t0\n") if __name__ == "__main__": main()