# HG changeset patch # User rhpvorderman # Date 1682071479 0 # Node ID 4c6df851e262e0f1845fe76f7d46afb429d64280 # Parent 33412e85e6698560636f39ed5f6fd1bc665167d4 "planemo upload commit 1a7731bb4fe2e80fb1fdc88121783068af3edb08" diff -r 33412e85e669 -r 4c6df851e262 CHANGES.md --- a/CHANGES.md Wed Feb 02 10:50:01 2022 +0000 +++ b/CHANGES.md Fri Apr 21 10:04:39 2023 +0000 @@ -1,3 +1,8 @@ +version 1.1.1 +------------- ++ Make sure the path to the zip is correct. ++ The html files are now UTF-8 encoded to prevent decoding errors. + version 1.1.0 ------------- + Add a container requirement to allow using docker or singularity. diff -r 33412e85e669 -r 4c6df851e262 complete_immunerepertoire.xml --- a/complete_immunerepertoire.xml Wed Feb 02 10:50:01 2022 +0000 +++ b/complete_immunerepertoire.xml Fri Apr 21 10:04:39 2023 +0000 @@ -1,4 +1,4 @@ - + r-gridextra r-ggplot2 diff -r 33412e85e669 -r 4c6df851e262 convert_windows_to_utf-8.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convert_windows_to_utf-8.py Fri Apr 21 10:04:39 2023 +0000 @@ -0,0 +1,14 @@ +import argparse + +if __name__ == "__main__": + parser = argparse.ArgumentParser() + parser.add_argument("files", nargs="+") + args = parser.parse_args() + for file in args.files: + with open(file, "rb") as in_r: + data = in_r.read() + text = data.decode("windows-1252") + text = text.replace("charset=windows-1252", "charset=\"UTF-8\"", 1) + with open(file, "wt", encoding="UTF-8") as out: + out.write(text) + diff -r 33412e85e669 -r 4c6df851e262 report_clonality/naive_cdr3_char.htm --- a/report_clonality/naive_cdr3_char.htm Wed Feb 02 10:50:01 2022 +0000 +++ b/report_clonality/naive_cdr3_char.htm Fri Apr 21 10:04:39 2023 +0000 @@ -1,7 +1,7 @@ - +