--- a/report_clonality/RScript.r	Thu Jul 06 09:07:52 2017 -0400
+++ b/report_clonality/RScript.r	Thu Oct 26 09:08:37 2017 -0400
@@ -49,6 +49,8 @@
 
 inputdata = read.table(infile, sep="\t", header=TRUE, fill=T, comment.char="", stringsAsFactors=F)
 
+inputdata$Sample = as.character(inputdata$Sample)
+
 
 print(paste("nrows: ", nrow(inputdata)))
 

--- a/tool_dependencies.xml	Thu Jul 06 09:07:52 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,36 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="igblastwrp" version="0.6">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://github.com/mikessh/higblast/releases/download/v0.6/igblastwrapper_linux64.tar.gz</action>
-                <action type="move_file">
-                    <source>bin</source>
-                    <destination>$INSTALL_DIR/</destination>
-                </action>
-                <action type="move_file">
-                    <source>data</source>
-                    <destination>$INSTALL_DIR/</destination>
-                </action>
-                <action type="move_file">
-                    <source>igblastwrp.jar</source>
-                    <destination>$INSTALL_DIR/</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable action="set_to" name="IGBLASTWRP">$INSTALL_DIR/</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-Downloads https://github.com/mikessh/higblast/
-        </readme>
-    </package>
-    <package name="weblogo" version="3.3">
-      <repository changeset_revision="648e4b32f15c" name="package_weblogo_3_3" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <!--
-    <package name="circostools" version="0.20">
-      <repository name="package_circostools_0_20" owner="iuc" />
-    </package>
-    -->
-</tool_dependency>