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1 <tool id="change_o_create_germlines_galaxy" name="Create Germlines" version="1.0">
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2 <description>Change-O</description>
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3 <command interpreter="bash">
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4 create_germlines.sh $input $type $cloned $out_file
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5 </command>
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6 <inputs>
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7 <param name="input" type="data" label="Input IMGT zip file" />
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8 <param name="type" type="select" label="Type" help="Specify type(s) of germlines to include full germline, germline with D-region masked, or germline for V-region only." >
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9 <option value="full" selected="true">Full germline</option>
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10 <option value="dmask">Masked D-region</option>
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11 <option value="vonly" >V-region only</option>
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12 </param>
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13 <param name="cloned" type="select" label="Cloned" help="Create one germline per clone" >
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14 <option value="true">True</option>
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15 <option value="false" selected="true">False</option>
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16 </param>
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17 </inputs>
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18 <outputs>
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19 <data format="tabular" name="out_file" label = "Change-O Germline on ${on_string}"/>
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20 </outputs>
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21 <citations>
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22 <citation type="doi">10.1093/bioinformatics/btv359</citation>
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23 </citations>
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24 <help>
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25
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26
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27 </help>
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28 </tool>
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