Mercurial > repos > davidvanzessen > change_o
comparison create_germlines.xml @ 0:183edf446dcf draft default tip
Uploaded
| author | davidvanzessen |
|---|---|
| date | Mon, 17 Jul 2017 07:44:27 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:183edf446dcf |
|---|---|
| 1 <tool id="change_o_create_germlines_galaxy" name="Create Germlines" version="1.0"> | |
| 2 <description>Change-O</description> | |
| 3 <command interpreter="bash"> | |
| 4 create_germlines.sh $input $type $cloned $out_file | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input" type="data" label="Input IMGT zip file" /> | |
| 8 <param name="type" type="select" label="Type" help="Specify type(s) of germlines to include full germline, germline with D-region masked, or germline for V-region only." > | |
| 9 <option value="full" selected="true">Full germline</option> | |
| 10 <option value="dmask">Masked D-region</option> | |
| 11 <option value="vonly" >V-region only</option> | |
| 12 </param> | |
| 13 <param name="cloned" type="select" label="Cloned" help="Create one germline per clone" > | |
| 14 <option value="true">True</option> | |
| 15 <option value="false" selected="true">False</option> | |
| 16 </param> | |
| 17 </inputs> | |
| 18 <outputs> | |
| 19 <data format="tabular" name="out_file" label = "Change-O Germline on ${on_string}"/> | |
| 20 </outputs> | |
| 21 <citations> | |
| 22 <citation type="doi">10.1093/bioinformatics/btv359</citation> | |
| 23 </citations> | |
| 24 <help> | |
| 25 | |
| 26 | |
| 27 </help> | |
| 28 </tool> |