Mercurial > repos > davidvanzessen > change_o
comparison makedb.xml @ 0:183edf446dcf draft default tip
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| author | davidvanzessen |
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| date | Mon, 17 Jul 2017 07:44:27 -0400 |
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| -1:000000000000 | 0:183edf446dcf |
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| 1 <tool id="change_o_makdedb_galaxy" name="MakeDB" version="1.0"> | |
| 2 <description>Change-O</description> | |
| 3 <command interpreter="bash"> | |
| 4 makedb.sh $input $noparse $scores $regions $out_file | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input" type="data" label="Input IMGT zip file" /> | |
| 8 <param name="noparse" type="select" label="No parse" help="Specify if input IDs should not be parsed to add new columns to database." > | |
| 9 <option value="true">True</option> | |
| 10 <option value="false" selected="true">False</option> | |
| 11 </param> | |
| 12 <param name="scores" type="select" label="Scores" help="Specify if alignment score metrics should be included in the output." > | |
| 13 <option value="true">True</option> | |
| 14 <option value="false" selected="true">False</option> | |
| 15 </param> | |
| 16 <param name="regions" type="select" label="Regions" help="Specify if IMGT framework and CDR regions should be included in the output." > | |
| 17 <option value="true">True</option> | |
| 18 <option value="false" selected="true">False</option> | |
| 19 </param> | |
| 20 </inputs> | |
| 21 <outputs> | |
| 22 <data format="tabular" name="out_file" label = "Change-o DB ${input.name}"/> | |
| 23 </outputs> | |
| 24 <citations> | |
| 25 <citation type="doi">10.1093/bioinformatics/btv359</citation> | |
| 26 </citations> | |
| 27 <help> | |
| 28 | |
| 29 | |
| 30 </help> | |
| 31 </tool> |