--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/demultiplex.xml	Fri Nov 09 05:37:11 2018 -0500
@@ -0,0 +1,46 @@
+<tool id="demultiplex-emc" name="Demultiplex" version="1.0.0">
+    <requirements>
+        <requirement type="package" version="3.7.0">python</requirement>
+        <requirement type="package" version="1.7.2">biopython</requirement>
+    </requirements>
+    <description></description>
+    <command>
+        mkdir outputs;
+        python3 $__tool_directory__/demultiplex.py 
+        --input $input
+        --format auto
+        --output-dir ./outputs
+        --mapping-file $mapping
+    </command>
+    <inputs>
+        <param name="input" type="data" format='fasta,fastq' label="The input fasta/fastq"/>
+        <param name="mapping" type="data" format='tabular' label="The mapping file"/>
+    </inputs>
+    <outputs>
+        <data name="debug" format="txt" label="debug"/>
+        <collection name='demultiplex_out' format_source='input' type='list'>
+            <discover_datasets pattern="__name_and_ext__" directory="outputs" format_source='input'/>
+        </collection>
+    </outputs>
+    <tests>
+    <!--
+        <test>
+            <param name="input1" value="1.bed"/>
+            <param name="input2" value="2.bed"/>
+            <output name="out_file1" file="cat_wrapper_out1.bed"/>
+        </test>
+        TODO: if possible, enhance the underlying test code to handle this test
+            the problem is multiple params with the same name "input2"
+        <test>
+            <param name="input1" value="1.bed"/>
+            <param name="input2" value="2.bed"/>
+            <param name="input2" value="3.bed"/>
+            <output name="out_file1" file="cat_wrapper_out2.bed"/>
+        </test>
+    -->
+    </tests>
+    <help>
+There is no help
+    </help>
+</tool>
+