Mercurial > repos > davidvanzessen > fetch_vep_cache_data
diff data_manager/fetch_vep_cache_data.xml @ 0:de3516853bde draft default tip
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author | davidvanzessen |
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date | Fri, 30 Nov 2018 09:56:38 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager/fetch_vep_cache_data.xml Fri Nov 30 09:56:38 2018 -0500 @@ -0,0 +1,37 @@ +<tool id="fetch_vep_cache_data" name="VEP Cache" version="0.0.1" tool_type="manage_data"> + <requirements> + <requirement type="package" version="94.5">ensembl-vep</requirement> + </requirements> + <description>fetching</description> + + <command detect_errors="exit_code"> +python $__tool_directory__/fetch_vep_cache_data.py +--output-file ${ out_file } +--output-dir ${ out_file.extra_files_path } +--assembly ${ dbkey }${ extra } + </command> + <inputs> + <param name="dbkey" type="select" label="Species"> + <option value="homo_sapiens">Human</option> + <option value="mus_musculus">Mouse</option> + </param> + <param name="extra" type="select" label="Get the Ensembl, Refseq or merged Ensembl/Refseq"> + <option value="" selected="true">Ensembl</option> + <option value="_refseq">Refseq</option> + <option value="_merged">Merged</option> + </param> + </inputs> + <outputs> + <data name="out_file" format="data_manager_json"/> + </outputs> + <!-- + <tests> + <test> + DON'T FORGET TO DEFINE SOME TOOL TESTS + </test> + </tests> + --> + <help> + There is no help + </help> +</tool> \ No newline at end of file