Mercurial > repos > davidvanzessen > imgt_locus_split
diff imgt_locus_split.xml @ 2:4bb8f6523130 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 05 Mar 2019 04:41:47 -0500 |
| parents | 418b7dbc8947 |
| children | 9aa036caa8e9 |
line wrap: on
line diff
--- a/imgt_locus_split.xml Mon Jul 17 08:54:02 2017 -0400 +++ b/imgt_locus_split.xml Tue Mar 05 04:41:47 2019 -0500 @@ -1,19 +1,12 @@ <tool id="imgt_locus_split" name="IMGT Locus Split" version="0.1"> <requirements> - <requirement type="package" version="0.4.13">python-magic</requirement> + <requirement type="package" version="0.4.15">python-magic</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python3 $__tool_directory__/imgt_locus_split.py - --input $input - --output-ig ${output_ig} - --output-igh ${output_igh} - --output-igk ${output_igk} - --output-igl ${output_igl} - --output-tr ${output_tr} - --output-tra ${output_tra} - --output-trb ${output_trb} - --output-trd ${output_trd} - --output-trg ${output_trg} + --input $input + --loci $loci + --output $output ]]></command> <inputs> <param name="input" type="data" format="data" label="The IMGT zip file to be split"/> @@ -30,33 +23,7 @@ </param> </inputs> <outputs> - <data format="imgt_archive" name="output_ig" label="Filtered IMGT IG: ${input.name}"> - <filter>loci.__contains__('IG')</filter> - </data> - <data format="imgt_archive" name="output_igh" label="Filtered IMGT IGH: ${input.name}"> - <filter>loci.__contains__('IGH')</filter> - </data> - <data format="imgt_archive" name="output_igk" label="Filtered IMGT IGK: ${input.name}"> - <filter>loci.__contains__('IGK')</filter> - </data> - <data format="imgt_archive" name="output_igl" label="Filtered IMGT IGL: ${input.name}"> - <filter>loci.__contains__('IGL')</filter> - </data> - <data format="imgt_archive" name="output_tr" label="Filtered IMGT TR: ${input.name}"> - <filter>loci.__contains__('TR')</filter> - </data> - <data format="imgt_archive" name="output_tra" label="Filtered IMGT TRA: ${input.name}"> - <filter>loci.__contains__('TRA')</filter> - </data> - <data format="imgt_archive" name="output_trb" label="Filtered IMGT TRB: ${input.name}"> - <filter>loci.__contains__('TRB')</filter> - </data> - <data format="imgt_archive" name="output_trd" label="Filtered IMGT TRD: ${input.name}"> - <filter>loci.__contains__('TRD')</filter> - </data> - <data format="imgt_archive" name="output_trg" label="Filtered IMGT TRG: ${input.name}"> - <filter>loci.__contains__('TRG')</filter> - </data> + <data format="imgt_archive" name="output" label="${input.name} $loci" /> </outputs> <help><![CDATA[ Creates a new IMGT zip file for every checked locus with sequences from only that locus.