Mercurial > repos > davidvanzessen > imgt_locus_split
diff imgt_locus_split.xml @ 0:b00c257f0a67 draft
Uploaded
author | davidvanzessen |
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date | Thu, 13 Jul 2017 10:24:39 -0400 |
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children | 418b7dbc8947 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/imgt_locus_split.xml Thu Jul 13 10:24:39 2017 -0400 @@ -0,0 +1,34 @@ +<tool id="imgt_locus_split" name="IMGT Locus Split" version="0.1"> + <requirements> + <requirement type="package" version="0.4.13">python-magic</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + python3 $__tool_directory__/imgt_locus_split.py + --input $input + --loci $loci + --output $output + ]]></command> + <inputs> + <param name="input" type="data" format="data" label="The IMGT zip file to be split"/> + <param name="loci" type="select" label="Loci" multiple="true" display="checkboxes"> + <option value="IG" selected="true">IG</option> + <option value="IGH">IGH</option> + <option value="IGK">IGK</option> + <option value="IGL">IGL</option> + <option value="TR" selected="true">TR</option> + <option value="TRA">TRA</option> + <option value="TRB">TRB</option> + <option value="TRD">TRD</option> + <option value="TRG">TRG</option> + </param> + </inputs> + <outputs> + <data format="imgt_archive" name="output" label="${input.name} $loci" /> + </outputs> + <help><![CDATA[ + Creates a new IMGT zip file for every checked locus with sequences from only that locus. + ]]></help> + <citations> + <citation type="doi">10.1093/nar/gku1056</citation> + </citations> +</tool> \ No newline at end of file