diff imgt_locus_split.xml @ 0:b00c257f0a67 draft

Uploaded
author davidvanzessen
date Thu, 13 Jul 2017 10:24:39 -0400
parents
children 418b7dbc8947
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imgt_locus_split.xml	Thu Jul 13 10:24:39 2017 -0400
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+<tool id="imgt_locus_split" name="IMGT Locus Split" version="0.1">
+    <requirements>
+        <requirement type="package" version="0.4.13">python-magic</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        python3 $__tool_directory__/imgt_locus_split.py 
+            --input $input
+            --loci $loci
+            --output $output
+    ]]></command>
+    <inputs>
+        <param name="input" type="data" format="data" label="The IMGT zip file to be split"/>
+        <param name="loci" type="select" label="Loci" multiple="true" display="checkboxes">
+            <option value="IG" selected="true">IG</option>
+            <option value="IGH">IGH</option>
+            <option value="IGK">IGK</option>
+            <option value="IGL">IGL</option>
+            <option value="TR" selected="true">TR</option>
+            <option value="TRA">TRA</option>
+            <option value="TRB">TRB</option>
+            <option value="TRD">TRD</option>
+            <option value="TRG">TRG</option>
+        </param>
+    </inputs>
+    <outputs>
+        <data format="imgt_archive" name="output" label="${input.name} $loci" />
+    </outputs>
+    <help><![CDATA[
+        Creates a new IMGT zip file for every checked locus with sequences from only that locus.
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1093/nar/gku1056</citation>
+    </citations>
+</tool>
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