Mercurial > repos > davidvanzessen > shm_csr

annotate change_o/select_first_in_clone.r @ 82:a103134ee6e0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Thu, 25 Feb 2021 10:32:32 +0000
parents 6cd12c71c3d3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
55
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
1 args <- commandArgs(trailingOnly = TRUE)
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
2
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
3 input.file = args[1]
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
4 output.file = args[2]
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
5
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
6 print("select_in_first_clone.r")
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
7 print(input.file)
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
8 print(output.file)
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
9
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
10 input = read.table(input.file, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="")
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
11
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
12 input = input[!duplicated(input$CLONE),]
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
13
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
14 names(input)[1] = "Sequence.ID"
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
15
6cd12c71c3d3 Uploaded
davidvanzessen
parents:
diff changeset
16 write.table(input, output.file, quote=F, sep="\t", row.names=F, col.names=T, na="")