Mercurial > repos > davidvanzessen > shm_csr

annotate change_o/define_clones.r @ 41:b8ac74723ab0 draft

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author davidvanzessen
date Tue, 14 Mar 2017 09:30:16 -0400
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1 args <- commandArgs(trailingOnly = TRUE)
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3 input=args[1]
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4 output=args[2]
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6 change.o = read.table(input, header=T, sep="\t", quote="", stringsAsFactors=F)
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8 freq = data.frame(table(change.o$CLONE))
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9 freq2 = data.frame(table(freq$Freq))
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11 freq2$final = as.numeric(freq2$Freq) * as.numeric(as.character(freq2$Var1))
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13 names(freq2) = c("Clone size", "Nr of clones", "Nr of sequences")
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15 write.table(x=freq2, file=output, sep="\t",quote=F,row.names=F,col.names=T)