Mercurial > repos > davidvanzessen > shm_csr

annotate tests/validation_data/shm_overview.txt @ 98:d714f5ea83d7 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 1a01065a084a817382872154f779b94090a35ebf
author rhpvorderman
date Wed, 10 Jan 2024 12:32:47 +0000
parents 6809c63d9161
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
83
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
1 IGA.x IGA.y IGA.z IGA1.x IGA1.y IGA1.z IGA2.x IGA2.y IGA2.z IGG.x IGG.y IGG.z IGG1.x IGG1.y IGG1.z IGG2.x IGG2.y IGG2.z IGG3.x IGG3.y IGG3.z IGG4.x IGG4.y IGG4.z IGM.x IGM.y IGM.z IGE.x IGE.y IGE.z all.x all.y all.z un.x un.y un.z
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
2 Number of Mutations (%) 17977 195251 9.2 12223 126298 9.7 5754 68953 8.3 9036 99835 9.1 5492 58332 9.4 2777 31881 8.7 388 5570 7 379 4052 9.4 0 213 0 0 0 0 27013 295299 9.1 3486 40247 8.7
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
3 Median of Number of Mutations (%) 19 213 8.9 20 213 9.4 16.5 213 7.8 18 213 8.5 18 213 8.5 17 213 8.1 13.5 213 6.3 18 213 8.5 0 213 0 0 0 0 18 213 8.5 16 213 7.5
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
4 Transitions (%) 10318 17977 57.4 7067 12223 57.8 3251 5754 56.5 5045 9036 55.8 3062 5492 55.8 1573 2777 56.6 211 388 54.4 199 379 52.5 0 0 0 0 0 15363 27013 56.9 1983 3486 56.9
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
5 Transversions (%) 7659 17977 42.6 5156 12223 42.2 2503 5754 43.5 3991 9036 44.2 2430 5492 44.2 1204 2777 43.4 177 388 45.6 180 379 47.5 0 0 0 0 0 11650 27013 43.1 1503 3486 43.1
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
6 Transitions at G C (%) 5933 10299 57.6 4111 7056 58.3 1822 3243 56.2 2836 5066 56 1736 3093 56.1 885 1567 56.5 112 202 55.4 103 204 50.5 0 0 0 0 0 8769 15365 57.1 1111 1968 56.5
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
7 Targeting of G C (%) 10299 17977 57.3 7056 12223 57.7 3243 5754 56.4 5066 9036 56.1 3093 5492 56.3 1567 2777 56.4 202 388 52.1 204 379 53.8 0 0 0 0 0 15365 27013 56.9 1968 3486 56.5
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
8 Transitions at A T (%) 4385 7678 57.1 2956 5167 57.2 1429 2511 56.9 2209 3970 55.6 1326 2399 55.3 688 1210 56.9 99 186 53.2 96 175 54.9 0 0 0 0 0 6594 11648 56.6 872 1518 57.4
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
9 Targeting of A T (%) 7678 17977 42.7 5167 12223 42.3 2511 5754 43.6 3970 9036 43.9 2399 5492 43.7 1210 2777 43.6 186 388 47.9 175 379 46.2 0 0 0 0 0 11648 27013 43.1 1518 3486 43.5
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
10 FR R/S (ratio) 7123 3750 1.9 4909 2586 1.9 2214 1164 1.9 3622 1847 2 2246 1148 2 1045 560 1.9 164 68 2.4 167 71 2.4 0 0 0 0 0 10745 5597 1.9 1336 719 1.9
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
11 CDR R/S (ratio) 5901 1203 4.9 3873 855 4.5 2028 348 5.8 2962 605 4.9 1717 381 4.5 998 174 5.7 126 30 4.2 121 20 6 0 0 0 0 0 8863 1808 4.9 1208 223 5.4
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
12 nt in FR 151127 195251 77.4 97738 126298 77.4 53389 68953 77.4 77252 99835 77.4 45155 58332 77.4 24674 31881 77.4 4289 5570 77 3134 4052 77.3 165 213 77.5 0 0 0 228544 295299 77.4 31179 40247 77.5
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
13 nt in CDR 44124 195251 22.6 28560 126298 22.6 15564 68953 22.6 22583 99835 22.6 13177 58332 22.6 7207 31881 22.6 1281 5570 23 918 4052 22.7 48 213 22.5 0 0 0 66755 295299 22.6 9068 40247 22.5
90
6809c63d9161 "planemo upload commit fd64827ff6e63df008f6f50ddb8576ad2b1dbb26"
rhpvorderman
parents: 83
diff changeset
14 Tandems/Expected (ratio) 2438 1921.45 1.27 1680 1360.14 1.24 758 561.32 1.35 1212 959.09 1.26 769 603.44 1.27 357 273.25 1.31 43 38.75 1.11 43 43.64 0.99 0 0 0 0 0 0 3650 2880.54 1.27 482 349.88 1.38
83
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
15 RGYW (%) 3163 17977 17.6 2186 12223 17.9 978 5754 17 1524 9036 16.9 911 5492 16.6 485 2777 17.5 63 388 16.2 65 379 17.2 0 0 0 0 0 0 4687 27013 17.4 602 3486 17.3
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
16 WRCY (%) 2984 17977 16.6 2060 12223 16.9 924 5754 16.1 1445 9036 16 888 5492 16.2 455 2777 16.4 52 388 13.4 50 379 13.2 0 0 0 0 0 0 4429 27013 16.4 614 3486 17.6
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
17 WA (%) 2610 17977 14.5 1715 12223 14 895 5754 15.6 1420 9036 15.7 859 5492 15.6 433 2777 15.6 67 388 17.3 61 379 16.1 0 0 0 0 0 0 4030 27013 14.9 540 3486 15.5
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
18 TW (%) 1561 17977 8.7 1044 12223 8.5 517 5754 9 818 9036 9.1 474 5492 8.6 265 2777 9.5 34 388 8.8 46 379 12.1 0 0 0 0 0 0 2379 27013 8.8 330 3486 9.5
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
19 A 49123 195251 25.16 31648 126298 25.06 17475 68953 25.34 24685 99835 24.73 14372 58332 24.64 7945 31881 24.92 1399 5570 25.12 969 4052 23.91 58 213 27.23 0 0 0 73866 295299 25.01 10122 40247 25.15
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
20 C 48130 195251 24.65 31276 126298 24.76 16854 68953 24.44 25076 99835 25.12 14646 58332 25.11 8009 31881 25.12 1389 5570 24.94 1032 4052 25.47 51 213 23.94 0 0 0 73257 295299 24.81 9848 40247 24.47
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
21 T 43599 195251 22.33 28348 126298 22.45 15251 68953 22.12 22415 99835 22.45 13167 58332 22.57 7087 31881 22.23 1243 5570 22.32 918 4052 22.66 47 213 22.07 0 0 0 66061 295299 22.37 8943 40247 22.22
729738462297 "planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
rhpvorderman
parents:
diff changeset
22 G 54399 195251 27.86 35026 126298 27.73 19373 68953 28.1 27659 99835 27.7 16147 58332 27.68 8840 31881 27.73 1539 5570 27.63 1133 4052 27.96 57 213 26.76 0 0 0 82115 295299 27.81 11334 40247 28.16