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comparison shm_csr.xml @ 59:1ad34508be98 draft

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Uploaded
author davidvanzessen
date Tue, 18 Jul 2017 05:03:55 -0400
parents 1a8e1dd21b16
children 3b5fe323f563
comparison
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58:1a8e1dd21b16 59:1ad34508be98
1 <tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.0"> 1 <tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.0">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <!--
4 <requirement type="package" version="3.3.2">r-base</requirement> 5 <requirement type="package" version="3.3.2">r-base</requirement>
5 <requirement type="package" version="3.1_3">r-seqinr</requirement> 6 <requirement type="package" version="3.1_3">r-seqinr</requirement>
6 <requirement type="package" version="2.2.0">r-ggplot2</requirement> 7 <requirement type="package" version="2.2.0">r-ggplot2</requirement>
7 <requirement type="package" version="1.4.2">r-reshape2</requirement> 8 <requirement type="package" version="1.4.2">r-reshape2</requirement>
8 <requirement type="package" version="0.4.1">r-scales</requirement> 9 <requirement type="package" version="0.4.1">r-scales</requirement>
9 <requirement type="package" version="1.10.0">r-data.table</requirement> 10 <requirement type="package" version="1.10.0">r-data.table</requirement>
11 -->
10 </requirements> 12 </requirements>
11 <command interpreter="bash"> 13 <command interpreter="bash">
12 #if str ( $filter_unique.filter_unique_select ) == "remove": 14 #if str ( $filter_unique.filter_unique_select ) == "remove":
13 wrapper.sh $in_file custom $out_file $out_file.files_path "${in_file.name}" "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_unique.filter_unique_select $filter_unique.filter_unique_clone_count $class_filter_cond.class_filter $empty_region_filter $fast 15 wrapper.sh $in_file custom $out_file $out_file.files_path "${in_file.name}" "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_unique.filter_unique_select $filter_unique.filter_unique_clone_count $class_filter_cond.class_filter $empty_region_filter $fast
14 #else: 16 #else: