Mercurial > repos > davidvanzessen > shm_csr

comparison shm_csr.xml @ 30:33a7c49d48a7 draft

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author davidvanzessen
date Mon, 12 Dec 2016 05:19:58 -0500
parents 80c4eebf7bc9
children fe44a905aee9
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29:80c4eebf7bc9 30:33a7c49d48a7
120 120
121 **Filter unique sequences** 121 **Filter unique sequences**
122 122
123 *Remove unique:* 123 *Remove unique:*
124 124
125 This filter consists of two different steps.
126 125
127 Step 1: removes all sequences of which the nucleotide sequence in the “analysed region” (see sequence starts at filter) occurs only once. (Sub)classes are not taken into account in this filter step. 126 This filter consists of two different steps.
128 127
129 Step 2: removes all duplicate sequences (sequences with the exact same nucleotide sequence in the analysed region and the same (sub)class). 128 Step 1: removes all sequences of which the nucleotide sequence in the “analysed region” (see sequence starts at filter) occurs only once. (Sub)classes are not taken into account in this filter step.
130 129
131 .. class:: infomark 130 Step 2: removes all duplicate sequences (sequences with the exact same nucleotide sequence in the analysed region and the same (sub)class).
132 131
133 Note: This means that sequences with the same nucleotide sequence but a different (sub)class will be included in the results of both (sub)classes. 132 .. class:: infomark
133
134 Note: This means that sequences with the same nucleotide sequence but a different (sub)class will be included in the results of both (sub)classes.
134 135
135 *Keep unique:* 136 *Keep unique:*
136 137
137 Removes all duplicate sequences (sequences with the exact same nucleotide sequence in the analysed region and the same (sub)class). 138 Removes all duplicate sequences (sequences with the exact same nucleotide sequence in the analysed region and the same (sub)class).
138 139
139 Example of the sequences that are included using either the “remove unique filter” or the “keep unique filter” 140 Example of the sequences that are included using either the “remove unique filter” or the “keep unique filter”
140 141
141 +--------------------------+ 142 +--------------------------+
142 | unique filter | 143 | unique filter |