Mercurial > repos > davidvanzessen > shm_csr

comparison sequence_overview.py @ 96:385dea3c6cb5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 423a48569c69301fdbf893ac3a649128404dfff5
author rhpvorderman
date Fri, 05 Jan 2024 08:53:22 +0000
parents 84e9e5c8c101
children
comparison
equal deleted inserted replaced
95:d63eff357515 96:385dea3c6cb5
99 empty_region_filter: str): 99 empty_region_filter: str):
100 os.makedirs(outdir, exist_ok=True) 100 os.makedirs(outdir, exist_ok=True)
101 sequence_columns = [ 101 sequence_columns = [
102 "FR1.IMGT.seq", "CDR1.IMGT.seq", "FR2.IMGT.seq", "CDR2.IMGT.seq", 102 "FR1.IMGT.seq", "CDR1.IMGT.seq", "FR2.IMGT.seq", "CDR2.IMGT.seq",
103 "FR3.IMGT.seq", "CDR3.IMGT.seq"] 103 "FR3.IMGT.seq", "CDR3.IMGT.seq"]
104 if empty_region_filter == "leader": 104 if empty_region_filter == "leader" or empty_region_filter == "None":
105 sequence_columns = sequence_columns 105 sequence_columns = sequence_columns
106 elif empty_region_filter == "FR1": 106 elif empty_region_filter == "FR1":
107 sequence_columns = sequence_columns[1:] 107 sequence_columns = sequence_columns[1:]
108 elif empty_region_filter == "CDR1": 108 elif empty_region_filter == "CDR1":
109 sequence_columns = sequence_columns[2:] 109 sequence_columns = sequence_columns[2:]