Mercurial > repos > davidvanzessen > shm_csr

comparison wrapper.sh @ 36:43d182135230 draft

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Uploaded
author davidvanzessen
date Fri, 16 Dec 2016 10:03:43 -0500
parents 744e5e2e3556
children 767dd9327009
comparison
equal deleted inserted replaced
35:744e5e2e3556 36:43d182135230
71 echo "---------------- creating new IMGT zips ----------------" 71 echo "---------------- creating new IMGT zips ----------------"
72 echo "---------------- creating new IMGT zips ----------------<br />" >> $log 72 echo "---------------- creating new IMGT zips ----------------<br />" >> $log
73 73
74 mkdir $outdir/new_IMGT 74 mkdir $outdir/new_IMGT
75 75
76 cat `find $PWD/files/ -name "1_*"` > "$outdir/new_IMGT/1_Summary.txt" 76 cat "`find $PWD/files/ -name "1_*"`" > "$outdir/new_IMGT/1_Summary.txt"
77 cat `find $PWD/files/ -name "2_*"` > "$outdir/new_IMGT/2_IMGT-gapped-nt-sequences.txt" 77 cat "`find $PWD/files/ -name "2_*"`" > "$outdir/new_IMGT/2_IMGT-gapped-nt-sequences.txt"
78 cat `find $PWD/files/ -name "3_*"` > "$outdir/new_IMGT/3_Nt-sequences.txt" 78 cat "`find $PWD/files/ -name "3_*"`" > "$outdir/new_IMGT/3_Nt-sequences.txt"
79 cat `find $PWD/files/ -name "4_*"` > "$outdir/new_IMGT/4_IMGT-gapped-AA-sequences.txt" 79 cat "`find $PWD/files/ -name "4_*"`" > "$outdir/new_IMGT/4_IMGT-gapped-AA-sequences.txt"
80 cat `find $PWD/files/ -name "5_*"` > "$outdir/new_IMGT/5_AA-sequences.txt" 80 cat "`find $PWD/files/ -name "5_*"`" > "$outdir/new_IMGT/5_AA-sequences.txt"
81 cat `find $PWD/files/ -name "6_*"` > "$outdir/new_IMGT/6_Junction.txt" 81 cat "`find $PWD/files/ -name "6_*"`" > "$outdir/new_IMGT/6_Junction.txt"
82 cat `find $PWD/files/ -name "7_*"` > "$outdir/new_IMGT/7_V-REGION-mutation-and-AA-change-table.txt" 82 cat "`find $PWD/files/ -name "7_*"`" > "$outdir/new_IMGT/7_V-REGION-mutation-and-AA-change-table.txt"
83 cat `find $PWD/files/ -name "8_*"` > "$outdir/new_IMGT/8_V-REGION-nt-mutation-statistics.txt" 83 cat "`find $PWD/files/ -name "8_*"`" > "$outdir/new_IMGT/8_V-REGION-nt-mutation-statistics.txt"
84 cat `find $PWD/files/ -name "9_*"` > "$outdir/new_IMGT/9_V-REGION-AA-change-statistics.txt" 84 cat "`find $PWD/files/ -name "9_*"`" > "$outdir/new_IMGT/9_V-REGION-AA-change-statistics.txt"
85 cat `find $PWD/files/ -name "10_*"` > "$outdir/new_IMGT/10_V-REGION-mutation-hotspots.txt" 85 cat "`find $PWD/files/ -name "10_*"`" > "$outdir/new_IMGT/10_V-REGION-mutation-hotspots.txt"
86 86
87 mkdir $outdir/new_IMGT_IGA 87 mkdir $outdir/new_IMGT_IGA
88 cp $outdir/new_IMGT/* $outdir/new_IMGT_IGA 88 cp $outdir/new_IMGT/* $outdir/new_IMGT_IGA
89 89
90 mkdir $outdir/new_IMGT_IGA1 90 mkdir $outdir/new_IMGT_IGA1