Mercurial > repos > davidvanzessen > shm_csr

comparison shm_csr.xml @ 90:6809c63d9161 draft

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"planemo upload commit fd64827ff6e63df008f6f50ddb8576ad2b1dbb26"
author rhpvorderman
date Tue, 25 Jan 2022 11:28:29 +0000
parents 3c9d4d976c47
children f387cc1580c6
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89:3c9d4d976c47 90:6809c63d9161
1 <tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.3.0"> 1 <tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.4.0">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.7.1">python</requirement> 4 <requirement type="package" version="3.7.1">python</requirement>
5 <requirement type="package" version="0.4.4">changeo</requirement> 5 <requirement type="package" version="0.4.4">changeo</requirement>
6 <!--Biopython should be set at a version at the release of changeo 0.4.4. 6 <!--Biopython should be set at a version at the release of changeo 0.4.4.
14 <requirement type="package" version="1.11.4">r-data.table</requirement> 14 <requirement type="package" version="1.11.4">r-data.table</requirement>
15 <requirement type="package" version="6.0">unzip</requirement> 15 <requirement type="package" version="6.0">unzip</requirement>
16 <requirement type="package" version="4.4.18">bash</requirement> 16 <requirement type="package" version="4.4.18">bash</requirement>
17 <requirement type="package" version="1.34">tar</requirement> 17 <requirement type="package" version="1.34">tar</requirement>
18 <requirement type="package" version="5.39">file</requirement> 18 <requirement type="package" version="5.39">file</requirement>
19 <requirement type="package" version="4.6.0">findutils</requirement>
20 <requirement type="package" version="1.07.1">bc</requirement>
21 <requirement type="package" version="0.83">font-ttf-ubuntu</requirement>
19 </requirements> 22 </requirements>
20 <command interpreter="bash"> 23 <command interpreter="bash">
21 #if str ( $filter_unique.filter_unique_select ) == "remove": 24 #if str ( $filter_unique.filter_unique_select ) == "remove":
22 wrapper.sh $in_file custom $out_file $out_file.files_path "${in_file.name}" "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_unique.filter_unique_select $filter_unique.filter_unique_clone_count $class_filter_cond.class_filter $empty_region_filter $fast 25 wrapper.sh $in_file custom $out_file $out_file.files_path "${in_file.name}" "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_unique.filter_unique_select $filter_unique.filter_unique_clone_count $class_filter_cond.class_filter $empty_region_filter $fast
23 #else: 26 #else: