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comparison shm_selection.htm @ 90:6809c63d9161 draft

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"planemo upload commit fd64827ff6e63df008f6f50ddb8576ad2b1dbb26"
author rhpvorderman
date Tue, 25 Jan 2022 11:28:29 +0000
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89:3c9d4d976c47 90:6809c63d9161
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53 <p class=MsoNormalCxSpMiddle style='text-align:justify'><span lang=EN-GB 53 <p class=MsoNormalCxSpMiddle style='text-align:justify'><span lang=EN-GB
54 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"; 54 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif";
55 color:black'>Yaari, G. and Uduman, M. and Kleinstein, S. H. (2012). Quantifying 55 color:black'>Yaari, G. and Uduman, M. and Kleinstein, S. H. (2012). Quantifying
56 selection in high-throughput Immunoglobulin sequencing data sets. In<span 56 selection in high-throughput Immunoglobulin sequencing data sets. In<span
57 class=apple-converted-space>&nbsp;</span><em>Nucleic Acids Research, 40 (17), 57 class=apple-converted-space>&nbsp;</span><em>Nucleic Acids Research, 40 (17),
58 pp. e134–e134.</em><span class=apple-converted-space><i>&nbsp;</i></span>[</span><span 58 pp. e134–e134.</em><span class=apple-converted-space><i>&nbsp;</i></span>[</span><span
59 lang=EN-GB><a href="http://dx.doi.org/10.1093/nar/gks457" target="_blank"><span 59 lang=EN-GB><a href="http://dx.doi.org/10.1093/nar/gks457" target="_blank"><span
60 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"; 60 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif";
61 color:#303030'>doi:10.1093/nar/gks457</span></a></span><span lang=EN-GB 61 color:#303030'>doi:10.1093/nar/gks457</span></a></span><span lang=EN-GB
62 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"; 62 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif";
63 color:black'>][</span><span lang=EN-GB><a 63 color:black'>][</span><span lang=EN-GB><a
92 the results of the analysis of antigen selection as performed using BASELINe. 92 the results of the analysis of antigen selection as performed using BASELINe.
93 Details on the analysis performed by BASELINe can be found in Yaari et al, 93 Details on the analysis performed by BASELINe can be found in Yaari et al,
94 PMID: 22641856. The settings used for the analysis are</span><span lang=EN-GB 94 PMID: 22641856. The settings used for the analysis are</span><span lang=EN-GB
95 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>: 95 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>:
96 focused, SHM targeting model: human Tri-nucleotide, custom bounderies. The 96 focused, SHM targeting model: human Tri-nucleotide, custom bounderies. The
97 custom boundries are dependent on the ‘sequence starts at filter’. </span></p> 97 custom boundries are dependent on the ‘sequence starts at filter’. </span></p>
98 98
99 <p class=MsoNormalCxSpMiddle style='line-height:normal'><span lang=NL 99 <p class=MsoNormalCxSpMiddle style='line-height:normal'><span lang=NL
100 style='font-family:UICTFontTextStyleBody;color:black'>Leader: 100 style='font-family:UICTFontTextStyleBody;color:black'>Leader:
101 1:26:38:55:65:104:-</span></p> 101 1:26:38:55:65:104:-</span></p>
102 102