Mercurial > repos > davidvanzessen > shm_csr
comparison change_o/select_first_in_clone.r @ 55:6cd12c71c3d3 draft
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| author | davidvanzessen |
|---|---|
| date | Wed, 14 Jun 2017 11:14:00 -0400 |
| parents | |
| children |
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| 54:ba3220f921af | 55:6cd12c71c3d3 |
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| 1 args <- commandArgs(trailingOnly = TRUE) | |
| 2 | |
| 3 input.file = args[1] | |
| 4 output.file = args[2] | |
| 5 | |
| 6 print("select_in_first_clone.r") | |
| 7 print(input.file) | |
| 8 print(output.file) | |
| 9 | |
| 10 input = read.table(input.file, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="") | |
| 11 | |
| 12 input = input[!duplicated(input$CLONE),] | |
| 13 | |
| 14 names(input)[1] = "Sequence.ID" | |
| 15 | |
| 16 write.table(input, output.file, quote=F, sep="\t", row.names=F, col.names=T, na="") |