Mercurial > repos > davidvanzessen > shm_csr

comparison shm_csr.py @ 43:77a7ac76c7b9 draft

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Uploaded
author davidvanzessen
date Tue, 11 Apr 2017 08:02:17 -0400
parents ca2512e1e3ab
children 64711f461c8e
comparison
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42:1cf60ae234b4 43:77a7ac76c7b9
78 cdr1LengthDic[ID] = int(cdr1Length) if cdr1Length != "X" else 0 78 cdr1LengthDic[ID] = int(cdr1Length) if cdr1Length != "X" else 0
79 cdr2LengthDic[ID] = int(cdr2Length) if cdr2Length != "X" else 0 79 cdr2LengthDic[ID] = int(cdr2Length) if cdr2Length != "X" else 0
80 80
81 IDlist += [ID] 81 IDlist += [ID]
82 82
83 print mutationList, linecount 83 #print mutationList, linecount
84 84
85 AALength = (int(max(mutationList, key=lambda i: int(i[4]) if i[4] else 0)[4]) + 1) # [4] is the position of the AA mutation, None if silent 85 AALength = (int(max(mutationList, key=lambda i: int(i[4]) if i[4] else 0)[4]) + 1) # [4] is the position of the AA mutation, None if silent
86 if AALength < 60: 86 if AALength < 60:
87 AALength = 64 87 AALength = 64
88 88