Mercurial > repos > davidvanzessen > shm_csr

comparison tests/test_shm_csr.py @ 93:8fcf31272f6e draft

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planemo upload commit a43893724cc769bed8a1f19a5b19ec1ba20cb63c
author rhpvorderman
date Mon, 06 Mar 2023 11:36:32 +0000
parents cf8ad181628f
children 84e9e5c8c101
comparison
equal deleted inserted replaced
92:cf8ad181628f 93:8fcf31272f6e
41 requirements: Element = tool.find("requirements") 41 requirements: Element = tool.find("requirements")
42 container = requirements.find("container") 42 container = requirements.find("container")
43 return container.text 43 return container.text
44 44
45 45
46 def ignore_files(src, files):
47 "Ignore virtualenv and git directories to prevent massive tmp folders"
48 if os.path.basename(src) in (".venv", ".git"):
49 return files
50 return ()
51
46 @pytest.fixture(scope="module") 52 @pytest.fixture(scope="module")
47 def shm_csr_result(): 53 def shm_csr_result():
48 temp_dir = Path(tempfile.mkdtemp()) 54 temp_dir = Path(tempfile.mkdtemp())
49 tool_dir = temp_dir / "shm_csr" 55 tool_dir = temp_dir / "shm_csr"
50 shutil.copytree(GIT_ROOT, tool_dir) 56 shutil.copytree(
57 GIT_ROOT, tool_dir,
58 # Ignore .venv and .git directories.
59 ignore=ignore_files)
51 working_dir = temp_dir / "working" 60 working_dir = temp_dir / "working"
52 working_dir.mkdir(parents=True) 61 working_dir.mkdir(parents=True)
53 output_dir = temp_dir / "outputs" 62 output_dir = temp_dir / "outputs"
54 output_dir.mkdir(parents=True) 63 output_dir.mkdir(parents=True)
55 wrapper = str(tool_dir / "wrapper.sh") 64 wrapper = str(tool_dir / "wrapper.sh")