Mercurial > repos > davidvanzessen > shm_csr

comparison wrapper.sh @ 7:ad9be244b104 draft

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Uploaded
author davidvanzessen
date Mon, 07 Nov 2016 03:04:07 -0500
parents 2ddb9a21f635
children 59765d2c8890
comparison
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6:2ddb9a21f635 7:ad9be244b104
195 echo "---------------- sequence_overview.r ----------------" 195 echo "---------------- sequence_overview.r ----------------"
196 echo "---------------- sequence_overview.r ----------------<br />" >> $log 196 echo "---------------- sequence_overview.r ----------------<br />" >> $log
197 197
198 mkdir $outdir/sequence_overview 198 mkdir $outdir/sequence_overview
199 199
200 Rscript $dir/sequence_overview.r $outdir/before_unique_filter.txt $outdir/merged.txt $outdir/sequence_overview $classes $outdir/hotspot_analysis_sum.txt 2>&1 200 Rscript $dir/sequence_overview.r $outdir/before_unique_filter.txt $outdir/merged.txt $outdir/sequence_overview $classes $outdir/hotspot_analysis_sum.txt ${empty_region_filter} 2>&1
201 201
202 echo "<table border='1'>" > $outdir/base_overview.html 202 echo "<table border='1'>" > $outdir/base_overview.html
203 203
204 while IFS=$'\t' read ID class seq A C G T 204 while IFS=$'\t' read ID class seq A C G T
205 do 205 do