Mercurial > repos > davidvanzessen > shm_csr
comparison README.md @ 81:b6f9a640e098 draft
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| author | davidvanzessen |
|---|---|
| date | Fri, 19 Feb 2021 15:10:54 +0000 |
| parents | |
| children | 729738462297 |
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| 80:a4617f1d1d89 | 81:b6f9a640e098 |
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| 1 # SHM CSR | |
| 2 | |
| 3 Somatic hypermutation and class switch recombination pipeline. | |
| 4 The docker version can be found [here](https://github.com/ErasmusMC-Bioinformatics/ARGalaxy-docker). | |
| 5 | |
| 6 # Dependencies | |
| 7 -------------------- | |
| 8 [Python 2.7](https://www.python.org/) | |
| 9 [Change-O](https://changeo.readthedocs.io/en/version-0.4.4/) | |
| 10 [Baseline](http://selection.med.yale.edu/baseline/) | |
| 11 [R data.table](https://cran.r-project.org/web/packages/data.table/data.table.pdf) | |
| 12 [R ggplot2](https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf) | |
| 13 [R reshape2](https://cran.r-project.org/web/packages/reshape/reshape.pdf) |