Mercurial > repos > davidvanzessen > shm_csr

comparison shm_csr.xml @ 97:fbc6307dd83b draft

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planemo upload commit 91fd26f19cb20fc2ee4d87d7edbc9ce6099752b0
author rhpvorderman
date Mon, 08 Jan 2024 08:50:07 +0000
parents 385dea3c6cb5
children d714f5ea83d7
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96:385dea3c6cb5 97:fbc6307dd83b
1 <tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.9.0" profile="16.04"> 1 <tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.9.1" profile="16.04">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.7.1">python</requirement> 4 <requirement type="package" version="3.7.1">python</requirement>
5 <requirement type="package" version="0.4.4">changeo</requirement> 5 <requirement type="package" version="0.4.4">changeo</requirement>
6 <!--Biopython should be set at a version at the release of changeo 0.4.4. 6 <!--Biopython should be set at a version at the release of changeo 0.4.4.
35 $filter_unique.filter_unique_clone_count 35 $filter_unique.filter_unique_clone_count
36 $class_filter_cond.class_filter 36 $class_filter_cond.class_filter
37 $empty_region_filter 37 $empty_region_filter
38 $fast 38 $fast
39 #else: 39 #else:
40 $__tool_directory__/wrapper.sh 40 $__tool_directory__/wrapper.sh "$in_file"
41 "$input" custom 41 custom
42 $out_file $out_file.files_path 42 $out_file $out_file.files_path
43 "${in_file.name}" "-" $functionality $unique 43 "${in_file.name}" "-" $functionality $unique
44 $naive_output_cond.naive_output $naive_output_ca $naive_output_cg 44 $naive_output_cond.naive_output $naive_output_ca $naive_output_cg
45 $naive_output_cm $naive_output_ce $naive_output_all $naive_output_igm_naive 45 $naive_output_cm $naive_output_ce $naive_output_all $naive_output_igm_naive
46 $naive_output_igm_naive_memory 46 $naive_output_igm_naive_memory