--- a/shm_csr.xml	Tue Nov 08 07:32:54 2016 -0500
+++ b/shm_csr.xml	Wed Nov 09 09:45:32 2016 -0500
@@ -17,12 +17,12 @@
 			<option value="remove_unknown">Productive and Unproductive (Productive, Productive see comment, Unproductive, Unproductive and Unproductive see comment)</option>
 		</param>
 		<param name="filter_uniques" type="select" label="Filter unique sequences" help="See below for an example.">
-			<option value="remove">Remove uniques (Based on nucleotide sequence + C)</option>
+			<option value="remove" selected="true">Remove uniques (Based on nucleotide sequence + C)</option>
 			<option value="keep">Keep uniques (Based on nucleotide sequence + C)</option>
-			<option value="no" selected="true">No</option>
+			<option value="no">No</option>
 		</param>
 		<param name="unique" type="select" label="Remove duplicates based on" help="" >
-			<option value="VGene,AA.JUNCTION,best_match" selected="true">Top.V.Gene, CDR3 (AA), C region</option>
+			<option value="VGene,AA.JUNCTION,best_match">Top.V.Gene, CDR3 (AA), C region</option>
 			<option value="VGene,AA.JUNCTION">Top.V.Gene, CDR3 (AA)</option>
 			<option value="AA.JUNCTION,best_match">CDR3 (AA), C region</option>
 			<option value="AA.JUNCTION">CDR3 (AA)</option>
@@ -31,7 +31,7 @@
 			<option value="VGene,CDR3.IMGT.seq">Top.V.Gene, CDR3 (nt)</option>
 			<option value="CDR3.IMGT.seq,best_match">CDR3 (nt), C region</option>
 			<option value="CDR3.IMGT.seq">CDR3 (nt)</option>
-			<option value="Sequence.ID">Don't remove duplicates</option>
+			<option value="Sequence.ID" selected="true">Don't remove duplicates</option>
 		</param>
 		<param name="class_filter" type="select" label="Human Class/Subclass filter" help="" >
 			<option value="70_70" selected="true">>70% class and >70% subclass</option>