--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/remove_files.txt	Wed Oct 27 09:38:20 2021 +0000
@@ -0,0 +1,171 @@
+results/aa_histogram.txt
+results/aa_histogram_absent.txt
+results/aa_histogram_absent_IGA.txt
+results/aa_histogram_absent_IGG.txt
+results/aa_histogram_absent_IGM.txt
+results/aa_histogram_count.txt
+results/aa_histogram_count_IGA.txt
+results/aa_histogram_count_IGG.txt
+results/aa_histogram_count_IGM.txt
+results/aa_histogram_IGA.txt
+results/aa_histogram_IGG.txt
+results/aa_histogram_IGM.txt
+results/after_unique_filter.txt
+results/all_mean_n.txt
+results/all_mean_value.txt
+results/all_median_n.txt
+results/all_median_value.txt
+results/all_sum_n.txt
+results/all_sum_value.txt
+results/before_filters.txt
+results/before_unique_filter.txt
+results/data_sum.txt
+results/filtering_steps.txt
+results/hotspot_analysis_mean.txt
+results/hotspot_analysis_median.txt
+results/hotspot_analysis_sum.txt
+results/identified_genes.txt
+results/IGA1_mean_n.txt
+results/IGA1_mean_value.txt
+results/IGA1_median_n.txt
+results/IGA1_median_value.txt
+results/IGA1_sum_n.txt
+results/IGA1_sum_value.txt
+results/IGA2_mean_n.txt
+results/IGA2_mean_value.txt
+results/IGA2_median_n.txt
+results/IGA2_median_value.txt
+results/IGA2_sum_n.txt
+results/IGA2_sum_value.txt
+results/IGA_mean_n.txt
+results/IGA_mean_value.txt
+results/IGA_median_n.txt
+results/IGA_median_value.txt
+results/IGA_sum_n.txt
+results/IGA_sum_value.txt
+results/IGE_mean_n.txt
+results/IGE_mean_value.txt
+results/IGE_median_n.txt
+results/IGE_median_value.txt
+results/IGE_sum_n.txt
+results/IGE_sum_value.txt
+results/IGG1_mean_n.txt
+results/IGG1_mean_value.txt
+results/IGG1_median_n.txt
+results/IGG1_median_value.txt
+results/IGG1_sum_n.txt
+results/IGG1_sum_value.txt
+results/IGG2_mean_n.txt
+results/IGG2_mean_value.txt
+results/IGG2_median_n.txt
+results/IGG2_median_value.txt
+results/IGG2_sum_n.txt
+results/IGG2_sum_value.txt
+results/IGG3_mean_n.txt
+results/IGG3_mean_value.txt
+results/IGG3_median_n.txt
+results/IGG3_median_value.txt
+results/IGG3_sum_n.txt
+results/IGG3_sum_value.txt
+results/IGG4_mean_n.txt
+results/IGG4_mean_value.txt
+results/IGG4_median_n.txt
+results/IGG4_median_value.txt
+results/IGG4_sum_n.txt
+results/IGG4_sum_value.txt
+results/IGG_mean_n.txt
+results/IGG_mean_value.txt
+results/IGG_median_n.txt
+results/IGG_median_value.txt
+results/IGG_sum_n.txt
+results/IGG_sum_value.txt
+results/IGM_mean_n.txt
+results/IGM_mean_value.txt
+results/IGM_median_n.txt
+results/IGM_median_value.txt
+results/IGM_sum_n.txt
+results/IGM_sum_value.txt
+results/matched_all_mean.txt
+results/matched_all_median.txt
+results/matched_IGA1_mean.txt
+results/matched_IGA1_median.txt
+results/matched_IGA2_mean.txt
+results/matched_IGA2_median.txt
+results/matched_IGA_mean.txt
+results/matched_IGA_median.txt
+results/matched_IGE_mean.txt
+results/matched_IGE_median.txt
+results/matched_IGG1_mean.txt
+results/matched_IGG1_median.txt
+results/matched_IGG2_mean.txt
+results/matched_IGG2_median.txt
+results/matched_IGG3_mean.txt
+results/matched_IGG3_median.txt
+results/matched_IGG4_mean.txt
+results/matched_IGG4_median.txt
+results/matched_IGG_mean.txt
+results/matched_IGG_median.txt
+results/matched_IGM_mean.txt
+results/matched_IGM_median.txt
+results/matched_unmatched_mean.txt
+results/matched_unmatched_median.txt
+results/matched_unmatched_sum.txt
+results/mutationdict.txt
+results/mutation_in_motifs.txt
+results/mutations_mean.txt
+results/mutations_median.txt
+results/mutations_sum.txt
+results/RGYW.txt
+results/shm_overview_tandem_row.txt
+results/tandem_frequency.txt
+results/transitions_all_mean.txt
+results/transitions_all_median.txt
+results/transitions_IGA1_mean.txt
+results/transitions_IGA1_median.txt
+results/transitions_IGA2_mean.txt
+results/transitions_IGA2_median.txt
+results/transitions_IGA_mean.txt
+results/transitions_IGA_median.txt
+results/transitions_IGE_mean.txt
+results/transitions_IGE_median.txt
+results/transitions_IGG1_mean.txt
+results/transitions_IGG1_median.txt
+results/transitions_IGG2_mean.txt
+results/transitions_IGG2_median.txt
+results/transitions_IGG3_mean.txt
+results/transitions_IGG3_median.txt
+results/transitions_IGG4_mean.txt
+results/transitions_IGG4_median.txt
+results/transitions_IGG_mean.txt
+results/transitions_IGG_median.txt
+results/transitions_IGM_mean.txt
+results/transitions_IGM_median.txt
+results/transitions_unmatched_mean.txt
+results/transitions_unmatched_median.txt
+results/transitions_unmatched_sum.txt
+results/unmatched_mean_n.txt
+results/unmatched_mean_value.txt
+results/unmatched_median_n.txt
+results/unmatched_median_value.txt
+results/unmatched_sum_n.txt
+results/unmatched_sum_value.txt
+results/change_o/change-o-db.txt
+results/change_o/change-o-db-defined_first_clones.txt
+results/change_o/change-o-db-defined_first_clones-IGA.txt
+results/change_o/change-o-db-defined_first_clones-IGG.txt
+results/change_o/change-o-db-defined_first_clones-IGM.txt
+results/change_o/change-o-db-IGA.txt
+results/change_o/change-o-db-IGG.txt
+results/change_o/change-o-db-IGM.txt
+results/change_o/input.tab
+aa.txt
+aa_change_stats.txt
+gapped_aa.txt
+gapped_nt.txt
+hotspots.txt
+junction.txt
+mutationanalysis.txt
+mutationstats.txt
+sequences.txt
+summary.txt
+Rplots.pdf