--- a/wrapper.sh	Thu Nov 17 07:33:21 2016 -0500
+++ b/wrapper.sh	Wed Nov 23 09:05:40 2016 -0500
@@ -447,58 +447,58 @@
 
 	PWD="$tmp"
 
-echo "<div class='tabbertab' title='Clonality'>" >> $output #clonality tab
+	echo "<div class='tabbertab' title='Clonality'>" >> $output #clonality tab
 
-function clonality_table {
-	local infile=$1
-	local outfile=$2
-	
-	echo "<table class='pure-table pure-table-striped'>" >> $outfile
-	echo "<thead><tr><th>Clone size</th><th>Nr of clones</th><th>Nr of sequences</th></tr></thead>" >> $outfile
-	
-	first='true'
-	
-	while read size clones seqs
-	do
-		if [[ "$first" == "true" ]]; then
-			first="false"
-			continue
-		fi
-		echo "<tr><td>$size</td><td>$clones</td><td>$seqs</td></tr>" >> $outfile
-	done < $infile
-	
-	echo "</table>" >> $outfile
-}
-echo "<div class='tabber'>" >> $output
+	function clonality_table {
+		local infile=$1
+		local outfile=$2
+		
+		echo "<table class='pure-table pure-table-striped'>" >> $outfile
+		echo "<thead><tr><th>Clone size</th><th>Nr of clones</th><th>Nr of sequences</th></tr></thead>" >> $outfile
+		
+		first='true'
+		
+		while read size clones seqs
+		do
+			if [[ "$first" == "true" ]]; then
+				first="false"
+				continue
+			fi
+			echo "<tr><td>$size</td><td>$clones</td><td>$seqs</td></tr>" >> $outfile
+		done < $infile
+		
+		echo "</table>" >> $outfile
+	}
+	echo "<div class='tabber'>" >> $output
 
-echo "<div class='tabbertab' title='All'>" >> $output
-clonality_table $outdir/change_o/change-o-defined_clones-summary.txt $output
-echo "</div>" >> $output
+	echo "<div class='tabbertab' title='All'>" >> $output
+	clonality_table $outdir/change_o/change-o-defined_clones-summary.txt $output
+	echo "</div>" >> $output
 
-echo "<div class='tabbertab' title='IGA'>" >> $output
-clonality_table $outdir/change_o/change-o-defined_clones-summary-IGA.txt $output
-echo "</div>" >> $output
+	echo "<div class='tabbertab' title='IGA'>" >> $output
+	clonality_table $outdir/change_o/change-o-defined_clones-summary-IGA.txt $output
+	echo "</div>" >> $output
 
-echo "<div class='tabbertab' title='IGG'>" >> $output
-clonality_table $outdir/change_o/change-o-defined_clones-summary-IGG.txt $output
-echo "</div>" >> $output
+	echo "<div class='tabbertab' title='IGG'>" >> $output
+	clonality_table $outdir/change_o/change-o-defined_clones-summary-IGG.txt $output
+	echo "</div>" >> $output
 
-echo "<div class='tabbertab' title='IGM'>" >> $output
-clonality_table $outdir/change_o/change-o-defined_clones-summary-IGM.txt $output
-echo "</div>" >> $output
+	echo "<div class='tabbertab' title='IGM'>" >> $output
+	clonality_table $outdir/change_o/change-o-defined_clones-summary-IGM.txt $output
+	echo "</div>" >> $output
 
-echo "<div class='tabbertab' title='IGE'>" >> $output
-clonality_table $outdir/change_o/change-o-defined_clones-summary-IGM.txt $output
-echo "</div>" >> $output
+	echo "<div class='tabbertab' title='IGE'>" >> $output
+	clonality_table $outdir/change_o/change-o-defined_clones-summary-IGM.txt $output
+	echo "</div>" >> $output
 
-echo "<div class='tabbertab' title='Overview'>" >> $output
-cat "$outdir/sequence_overview/index.html" >> $output
-echo "</div>" >> $output
+	echo "<div class='tabbertab' title='Overview'>" >> $output
+	cat "$outdir/sequence_overview/index.html" >> $output
+	echo "</div>" >> $output
 
 
-echo "</div>" >> $output #clonality tabber end
+	echo "</div>" >> $output #clonality tabber end
 
-echo "</div>" >> $output #clonality tab end
+	echo "</div>" >> $output #clonality tab end
 
 fi