diff shm_csr.xml @ 47:64711f461c8e draft

Uploaded
author davidvanzessen
date Thu, 04 May 2017 07:43:09 -0400
parents a24f8c93583a
children f5fe63533c58
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--- a/shm_csr.xml	Wed Apr 12 04:28:16 2017 -0400
+++ b/shm_csr.xml	Thu May 04 07:43:09 2017 -0400
@@ -39,6 +39,7 @@
 				<option value="60_55">>60% class and >55% subclass</option>
 				<option value="70_0">>70% class</option>
 				<option value="60_0">>60% class</option>
+                <option value="25_0">>25% class</option>
 				<option value="101_101">Do not assign (sub)class</option>
 			</param>
 		</conditional>
@@ -183,7 +184,8 @@
 
 *Chunk hit percentage*: The percentage of the chunks that is aligned 
 
-*Nt hit percentage*: The percentage of chunks covering the subclass specific nucleotide match with the different subclasses. The most stringent filter for the subclass is 70% ‘nt hit percentage’ which means that 5 out of 7 subclass specific nucleotides for Cα or 6 out of 8 subclass specific nucleotides of Cγ should match with the specific subclass.
+*Nt hit percentage*: The percentage of chunks covering the subclass specific nucleotide match with the different subclasses. The most stringent filter for the subclass is 70% ‘nt hit percentage’ which means that 5 out of 7 subclass specific nucleotides for Cα or 6 out of 8 subclass specific nucleotides of Cγ should match with the specific subclass. 
+The option “>25% class” can be chosen when you only are interested in the class (Cα/Cγ/Cµ/Cɛ) of  your sequences and the length of your sequence is not long enough to assign the subclasses.
 
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