Mercurial > repos > davidvanzessen > shm_csr
diff shm_csr.xml @ 47:64711f461c8e draft
Uploaded
author | davidvanzessen |
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date | Thu, 04 May 2017 07:43:09 -0400 |
parents | a24f8c93583a |
children | f5fe63533c58 |
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--- a/shm_csr.xml Wed Apr 12 04:28:16 2017 -0400 +++ b/shm_csr.xml Thu May 04 07:43:09 2017 -0400 @@ -39,6 +39,7 @@ <option value="60_55">>60% class and >55% subclass</option> <option value="70_0">>70% class</option> <option value="60_0">>60% class</option> + <option value="25_0">>25% class</option> <option value="101_101">Do not assign (sub)class</option> </param> </conditional> @@ -183,7 +184,8 @@ *Chunk hit percentage*: The percentage of the chunks that is aligned -*Nt hit percentage*: The percentage of chunks covering the subclass specific nucleotide match with the different subclasses. The most stringent filter for the subclass is 70% ‘nt hit percentage’ which means that 5 out of 7 subclass specific nucleotides for Cα or 6 out of 8 subclass specific nucleotides of Cγ should match with the specific subclass. +*Nt hit percentage*: The percentage of chunks covering the subclass specific nucleotide match with the different subclasses. The most stringent filter for the subclass is 70% ‘nt hit percentage’ which means that 5 out of 7 subclass specific nucleotides for Cα or 6 out of 8 subclass specific nucleotides of Cγ should match with the specific subclass. +The option “>25% class” can be chosen when you only are interested in the class (Cα/Cγ/Cµ/Cɛ) of your sequences and the length of your sequence is not long enough to assign the subclasses. -----