Mercurial > repos > davidvanzessen > shm_csr

diff shm_downloads.htm @ 90:6809c63d9161 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit fd64827ff6e63df008f6f50ddb8576ad2b1dbb26"
author rhpvorderman
date Tue, 25 Jan 2022 11:28:29 +0000
parents ba33b94637ca
children
line wrap: on
line diff
--- a/shm_downloads.htm	Fri Nov 05 13:41:03 2021 +0000
+++ b/shm_downloads.htm	Tue Jan 25 11:28:29 2022 +0000
@@ -1,7 +1,7 @@
 <html>
 
 <head>
-<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
+<meta http-equiv=Content-Type content="text/html; charset=UTF-8">
 <meta name=Generator content="Microsoft Word 14 (filtered)">
 <style>
 <!--
@@ -77,7 +77,7 @@
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>The SHM Overview
 table as a dataset:</span></u><span lang=EN-GB style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'> Allows downloading of the SHM Overview
-table as a data set.  </span></p>
+table as a data set.  </span></p>
 
 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Motif data per
@@ -97,7 +97,7 @@
 every sequence:</span></u><span lang=EN-GB style='font-size:12.0pt;font-family:
 "Times New Roman","serif"'> links to a page showing for each transcript the
 sequence of the analysed region (as dependent on the sequence starts at filter),
-the assigned subclass and the number of sequenced A,C,G and T’s.</span></p>
+the assigned subclass and the number of sequenced A,C,G and T’s.</span></p>
 
 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>The data used to
@@ -135,7 +135,7 @@
 generate the frequency by class plot:</span></u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'> Allows
 downloading the data used to generate frequency by class plot included in the
-SHM frequency tab.           </span></p>
+SHM frequency tab.           </span></p>
 
 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>The data for
@@ -145,7 +145,7 @@
 &gt;20% SHM. Information is provided for each subclass.</span></p>
 
 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
-style='font-size:12.0pt;font-family:"Times New Roman","serif"'> </span></p>
+style='font-size:12.0pt;font-family:"Times New Roman","serif"'> </span></p>
 
 <p class=MsoNoSpacing style='text-align:justify'><b><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Transition
@@ -267,7 +267,7 @@
 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>The data used to
 generate the aa mutation frequency plot for IGE:</span></u><span lang=EN-GB
-style='font-size:12.0pt;font-family:"Times New Roman","serif"'>   Provides the
+style='font-size:12.0pt;font-family:"Times New Roman","serif"'>   Provides the
 data used to generate the aa mutation frequency plot for all IGE sequences in
 the antigen selection tab.</span></p>
 
@@ -314,7 +314,7 @@
 data:</span></u><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>
 Table output of the BASELINe analysis. Calculation of antigen selection as
 performed by BASELINe are shown for each individual IGG sequence and the sum of
-all IGG sequences.        </span></p>
+all IGG sequences.        </span></p>
 
 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Baseline IGM PDF:</span></u><span
@@ -373,7 +373,7 @@
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Sequence overlap
 between subclasses:</span></u><span lang=EN-GB style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'> Link to the overlap table as provided
-under the clonality overlap tab.         </span></p>
+under the clonality overlap tab.         </span></p>
 
 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>The Change-O DB
@@ -388,7 +388,7 @@
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>The Change-O DB
 defined clones summary file:</span></u><span lang=EN-GB style='font-size:12.0pt;
 font-family:"Times New Roman","serif"'> Gives a summary of the total number of
-clones in all sequences and their clone size.           </span></p>
+clones in all sequences and their clone size.           </span></p>
 
 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>The Change-O DB
@@ -423,7 +423,7 @@
 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB
 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>The Change-O DB
 file with defined clones of IGM:</span></u><span lang=EN-GB style='font-size:
-12.0pt;font-family:"Times New Roman","serif"'> Downloads a table
+12.0pt;font-family:"Times New Roman","serif"'> Downloads a table
 with the calculation of clonal relation between all IGM sequences. For each
 individual transcript the results of the clonal assignment as provided by
 Change-O are provided. Sequences with the same number in the CLONE column are