diff tests/validation_data/shm_overview.txt @ 83:729738462297 draft

"planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
author rhpvorderman
date Wed, 15 Sep 2021 12:24:06 +0000
parents
children 6809c63d9161
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tests/validation_data/shm_overview.txt	Wed Sep 15 12:24:06 2021 +0000
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+	IGA.x	IGA.y	IGA.z	IGA1.x	IGA1.y	IGA1.z	IGA2.x	IGA2.y	IGA2.z	IGG.x	IGG.y	IGG.z	IGG1.x	IGG1.y	IGG1.z	IGG2.x	IGG2.y	IGG2.z	IGG3.x	IGG3.y	IGG3.z	IGG4.x	IGG4.y	IGG4.z	IGM.x	IGM.y	IGM.z	IGE.x	IGE.y	IGE.z	all.x	all.y	all.z	un.x	un.y	un.z
+Number of Mutations (%)	17977	195251	9.2	12223	126298	9.7	5754	68953	8.3	9036	99835	9.1	5492	58332	9.4	2777	31881	8.7	388	5570	7	379	4052	9.4	0	213	0	0	0	0	27013	295299	9.1	3486	40247	8.7
+Median of Number of Mutations (%)	19	213	8.9	20	213	9.4	16.5	213	7.8	18	213	8.5	18	213	8.5	17	213	8.1	13.5	213	6.3	18	213	8.5	0	213	0	0	0	0	18	213	8.5	16	213	7.5
+Transitions (%)	10318	17977	57.4	7067	12223	57.8	3251	5754	56.5	5045	9036	55.8	3062	5492	55.8	1573	2777	56.6	211	388	54.4	199	379	52.5	0	0		0	0	0	15363	27013	56.9	1983	3486	56.9
+Transversions (%)	7659	17977	42.6	5156	12223	42.2	2503	5754	43.5	3991	9036	44.2	2430	5492	44.2	1204	2777	43.4	177	388	45.6	180	379	47.5	0	0		0	0	0	11650	27013	43.1	1503	3486	43.1
+Transitions at G C (%)	5933	10299	57.6	4111	7056	58.3	1822	3243	56.2	2836	5066	56	1736	3093	56.1	885	1567	56.5	112	202	55.4	103	204	50.5	0	0		0	0	0	8769	15365	57.1	1111	1968	56.5
+Targeting of G C (%)	10299	17977	57.3	7056	12223	57.7	3243	5754	56.4	5066	9036	56.1	3093	5492	56.3	1567	2777	56.4	202	388	52.1	204	379	53.8	0	0		0	0	0	15365	27013	56.9	1968	3486	56.5
+Transitions at A T (%)	4385	7678	57.1	2956	5167	57.2	1429	2511	56.9	2209	3970	55.6	1326	2399	55.3	688	1210	56.9	99	186	53.2	96	175	54.9	0	0		0	0	0	6594	11648	56.6	872	1518	57.4
+Targeting of A T (%)	7678	17977	42.7	5167	12223	42.3	2511	5754	43.6	3970	9036	43.9	2399	5492	43.7	1210	2777	43.6	186	388	47.9	175	379	46.2	0	0		0	0	0	11648	27013	43.1	1518	3486	43.5
+FR R/S (ratio)	7123	3750	1.9	4909	2586	1.9	2214	1164	1.9	3622	1847	2	2246	1148	2	1045	560	1.9	164	68	2.4	167	71	2.4	0	0		0	0	0	10745	5597	1.9	1336	719	1.9
+CDR R/S (ratio)	5901	1203	4.9	3873	855	4.5	2028	348	5.8	2962	605	4.9	1717	381	4.5	998	174	5.7	126	30	4.2	121	20	6	0	0		0	0	0	8863	1808	4.9	1208	223	5.4
+nt in FR	151127	195251	77.4	97738	126298	77.4	53389	68953	77.4	77252	99835	77.4	45155	58332	77.4	24674	31881	77.4	4289	5570	77	3134	4052	77.3	165	213	77.5	0	0	0	228544	295299	77.4	31179	40247	77.5
+nt in CDR	44124	195251	22.6	28560	126298	22.6	15564	68953	22.6	22583	99835	22.6	13177	58332	22.6	7207	31881	22.6	1281	5570	23	918	4052	22.7	48	213	22.5	0	0	0	66755	295299	22.6	9068	40247	22.5
+Tandems/Expected (ratio)	2438	2262.33	1.08	1680	1601.93	1.05	758	660.41	1.15	1212	1128.79	1.07	769	710.06	1.08	357	321.62	1.11	43	45.72	0.94	43	51.4	0.84	0	0	0	0	0	0	3650	3391.13	1.08	482	411.6	1.17
+RGYW (%)	3163	17977	17.6	2186	12223	17.9	978	5754	17	1524	9036	16.9	911	5492	16.6	485	2777	17.5	63	388	16.2	65	379	17.2	0	0	0	0	0	0	4687	27013	17.4	602	3486	17.3
+WRCY (%)	2984	17977	16.6	2060	12223	16.9	924	5754	16.1	1445	9036	16	888	5492	16.2	455	2777	16.4	52	388	13.4	50	379	13.2	0	0	0	0	0	0	4429	27013	16.4	614	3486	17.6
+WA (%)	2610	17977	14.5	1715	12223	14	895	5754	15.6	1420	9036	15.7	859	5492	15.6	433	2777	15.6	67	388	17.3	61	379	16.1	0	0	0	0	0	0	4030	27013	14.9	540	3486	15.5
+TW (%)	1561	17977	8.7	1044	12223	8.5	517	5754	9	818	9036	9.1	474	5492	8.6	265	2777	9.5	34	388	8.8	46	379	12.1	0	0	0	0	0	0	2379	27013	8.8	330	3486	9.5
+A	49123	195251	25.16	31648	126298	25.06	17475	68953	25.34	24685	99835	24.73	14372	58332	24.64	7945	31881	24.92	1399	5570	25.12	969	4052	23.91	58	213	27.23	0	0	0	73866	295299	25.01	10122	40247	25.15
+C	48130	195251	24.65	31276	126298	24.76	16854	68953	24.44	25076	99835	25.12	14646	58332	25.11	8009	31881	25.12	1389	5570	24.94	1032	4052	25.47	51	213	23.94	0	0	0	73257	295299	24.81	9848	40247	24.47
+T	43599	195251	22.33	28348	126298	22.45	15251	68953	22.12	22415	99835	22.45	13167	58332	22.57	7087	31881	22.23	1243	5570	22.32	918	4052	22.66	47	213	22.07	0	0	0	66061	295299	22.37	8943	40247	22.22
+G	54399	195251	27.86	35026	126298	27.73	19373	68953	28.1	27659	99835	27.7	16147	58332	27.68	8840	31881	27.73	1539	5570	27.63	1133	4052	27.96	57	213	26.76	0	0	0	82115	295299	27.81	11334	40247	28.16