Mercurial > repos > davidvanzessen > shm_csr

diff wrapper.sh @ 35:744e5e2e3556 draft

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Uploaded
author davidvanzessen
date Fri, 16 Dec 2016 10:00:10 -0500
parents 96c1276ceefe
children 43d182135230
line wrap: on
line diff
--- a/wrapper.sh	Fri Dec 16 09:53:09 2016 -0500
+++ b/wrapper.sh	Fri Dec 16 10:00:10 2016 -0500
@@ -41,13 +41,13 @@
 	tar -xJf $input -C "$PWD/files/$title"
 fi
 
-cat `find $PWD/files/ -name "1_*"` > $PWD/summary.txt
-cat `find $PWD/files/ -name "3_*"` > $PWD/sequences.txt
-cat `find $PWD/files/ -name "5_*"` > $PWD/aa.txt
-cat `find $PWD/files/ -name "6_*"` > $PWD/junction.txt
-cat `find $PWD/files/ -name "7_*"` > $PWD/mutationanalysis.txt
-cat `find $PWD/files/ -name "8_*"` > $PWD/mutationstats.txt
-cat `find $PWD/files/ -name "10_*"` > $PWD/hotspots.txt
+cat "`find $PWD/files/ -name "1_*"`" > $PWD/summary.txt
+cat "`find $PWD/files/ -name "3_*"`" > $PWD/sequences.txt
+cat "`find $PWD/files/ -name "5_*"`" > $PWD/aa.txt
+cat "`find $PWD/files/ -name "6_*"`" > $PWD/junction.txt
+cat "`find $PWD/files/ -name "7_*"`" > $PWD/mutationanalysis.txt
+cat "`find $PWD/files/ -name "8_*"`" > $PWD/mutationstats.txt
+cat "`find $PWD/files/ -name "10_*"`" > $PWD/hotspots.txt
 
 if [[ ${#BLASTN_DIR} -ge 5 ]] ; then
 	echo "On server, using BLASTN_DIR env: ${BLASTN_DIR}"