Mercurial > repos > davidvanzessen > shm_csr

diff wrapper.sh @ 94:84e9e5c8c101 draft

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"planemo upload commit d4be85014b638f1d50b318d4b735be7f6e973140"
author rhpvorderman
date Fri, 24 Mar 2023 16:58:28 +0000
parents 8fcf31272f6e
children d63eff357515
line wrap: on
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--- a/wrapper.sh	Mon Mar 06 11:36:32 2023 +0000
+++ b/wrapper.sh	Fri Mar 24 16:58:28 2023 +0000
@@ -16,11 +16,13 @@
 naive_output_cm=${12}
 naive_output_ce=${13}
 naive_output_all=${14}
-filter_unique=${15}
-filter_unique_count=${16}
-class_filter=${17}
-empty_region_filter=${18}
-fast=${19}
+naive_output_igm_naive=${15}
+naive_output_igm_naive_memory=${16}
+filter_unique=${17}
+filter_unique_count=${18}
+class_filter=${19}
+empty_region_filter=${20}
+fast=${21}
 
 BASENAME=$(basename $input)
 # Cut off .txz or .tgz suffix
@@ -822,6 +824,8 @@
 		cp $outdir/${NEW_IMGT_PREFIX}_IGG.txz ${naive_output_cg}
 		cp $outdir/${NEW_IMGT_PREFIX}_IGM.txz ${naive_output_cm}
 		cp $outdir/${NEW_IMGT_PREFIX}_IGE.txz ${naive_output_ce}
+    cp $outdir/${NEW_IMGT_PREFIX}_IGM_NAIVE.txz ${naive_output_igm_naive}
+    cp $outdir/${NEW_IMGT_PREFIX}_IGM_NAIVE_MEMORY.txz ${naive_output_igm_naive_memory}
 	fi
 fi