Mercurial > repos > davidvanzessen > shm_csr

diff merge_and_filter.r @ 93:8fcf31272f6e draft

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planemo upload commit a43893724cc769bed8a1f19a5b19ec1ba20cb63c
author rhpvorderman
date Mon, 06 Mar 2023 11:36:32 +0000
parents 729738462297
children 385dea3c6cb5
line wrap: on
line diff
--- a/merge_and_filter.r	Mon Dec 12 12:32:44 2022 +0000
+++ b/merge_and_filter.r	Mon Mar 06 11:36:32 2023 +0000
@@ -163,8 +163,8 @@
 	result[!higher_than,"best_match"] = paste("unmatched,", result[!higher_than,"best_match"])
 }
 
-if(class.filter == "101_101"){
-	result$best_match = "all"
+if(splt[1] == "101" & splt[2] == "101"){
+	result$best_match = splt[3]
 }
 
 write.table(x=result, file=gsub("merged.txt$", "before_filters.txt", output), sep="\t",quote=F,row.names=F,col.names=T)