Mercurial > repos > davidvanzessen > shm_csr

diff shm_csr.xml @ 34:96c1276ceefe draft

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Uploaded
author davidvanzessen
date Fri, 16 Dec 2016 09:53:09 -0500
parents fe44a905aee9
children a24f8c93583a
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--- a/shm_csr.xml	Thu Dec 15 09:44:17 2016 -0500
+++ b/shm_csr.xml	Fri Dec 16 09:53:09 2016 -0500
@@ -1,7 +1,7 @@
 <tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.0">
 	<description></description>
 	<command interpreter="bash">
-		wrapper.sh $in_file custom $out_file $out_file.files_path ${in_file.name} "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_uniques $class_filter_cond.class_filter $empty_region_filter $fast
+		wrapper.sh $in_file custom $out_file $out_file.files_path "${in_file.name}" "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_uniques $class_filter_cond.class_filter $empty_region_filter $fast
 	</command>
 	<inputs>
 		<param name="in_file" type="data" label="IMGT zip file to be analysed" />