--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/change_o/makedb.sh	Thu Oct 13 10:52:24 2016 -0400
@@ -0,0 +1,38 @@
+#!/bin/bash
+dir="$(cd "$(dirname "$0")" && pwd)"
+
+input=$1
+noparse=$2
+scores=$3
+regions=$4
+output=$5
+
+if [ "true" == "$noparse" ] ; then
+	noparse="--noparse"
+else
+	noparse=""
+fi
+
+if [ "true" == "$scores" ] ; then
+	scores="--scores"
+else
+	scores=""
+fi
+
+if [ "true" == "$regions" ] ; then
+	regions="--regions"
+else
+	regions=""
+fi
+
+mkdir $PWD/outdir
+
+echo "makedb: $PWD/outdir"
+
+python3 $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions
+#/data/users/david/anaconda3/bin/python $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions
+#/home/galaxy/anaconda3/bin/python $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions
+
+mv $PWD/outdir/output_db-pass.tab $output
+
+rm -rf $PWD/outdir/