Mercurial > repos > davidvanzessen > shm_csr

diff shm_csr.py @ 40:ca2512e1e3ab draft

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Uploaded
author davidvanzessen
date Thu, 29 Dec 2016 07:05:45 -0500
parents ce25fb581ca3
children 77a7ac76c7b9
line wrap: on
line diff
--- a/shm_csr.py	Thu Dec 22 09:39:27 2016 -0500
+++ b/shm_csr.py	Thu Dec 29 07:05:45 2016 -0500
@@ -38,7 +38,7 @@
 cdr1LengthDic = {}
 cdr2LengthDic = {}
 
-with open(infile, 'r') as i:
+with open(infile, 'ru') as i:
 	for line in i:
 		if first:
 			linesplt = line.split("\t")
@@ -80,6 +80,8 @@
 		
 		IDlist += [ID]
 
+print mutationList, linecount
+
 AALength = (int(max(mutationList, key=lambda i: int(i[4]) if i[4] else 0)[4]) + 1)  # [4] is the position of the AA mutation, None if silent
 if AALength < 60:
 	AALength = 64
@@ -173,7 +175,7 @@
 aggctatIndex = 0
 atagcctIndex = 0
 first = True
-with open(infile, 'r') as i:
+with open(infile, 'ru') as i:
 	for line in i:
 		if first:
 			linesplt = line.split("\t")