Mercurial > repos > davidvanzessen > shm_csr

diff wrapper.sh @ 98:d714f5ea83d7 draft default tip

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planemo upload commit 1a01065a084a817382872154f779b94090a35ebf
author rhpvorderman
date Wed, 10 Jan 2024 12:32:47 +0000
parents 385dea3c6cb5
children
line wrap: on
line diff
--- a/wrapper.sh	Mon Jan 08 08:50:07 2024 +0000
+++ b/wrapper.sh	Wed Jan 10 12:32:47 2024 +0000
@@ -22,7 +22,8 @@
 filter_unique_count=${18}
 class_filter=${19}
 empty_region_filter=${20}
-fast=${21}
+run_changeo=${21}
+run_baseline=${22}
 BASENAME=$(basename "$title")
 # Cut off .txz or .tgz suffix and also replace spaces with underscores.
 NEW_IMGT_PREFIX="new_IMGT_${BASENAME%.*}"
@@ -410,7 +411,7 @@
   rm 1_Summary.txt
 }
 
-if [[ "$fast" == "no" ]] ; then
+if [[ "$run_baseline" == "yes" ]] ; then
 
     
 
@@ -524,7 +525,7 @@
 
 echo "</div>" >> $output #CSR tab end
 
-if [[ "$fast" == "no" ]] ; then
+if [[ "$run_changeo" == "yes" ]] ; then
 
 	echo "---------------- change-o MakeDB ----------------"